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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4760-RC through 18771 annotations produced 1 hits



boule (bol):

Annotation Number : CG4760
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011206
Gbrowse : chr3L:9099647-9123452 (-) // 100.0 //
Probeset : 1623274_s_at
Accessions : protein= NP_001163394; /// NP_523989; /// NP_729456; /// NP_729457; /// NP_729458;, nucleotide= NM_001169923; /// NM_079265; /// NM_168318; /// NM_168319; /// NM_168320;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0043204 // p
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0011206.
Homophila reports that CG4760 is a close match (2e-12) to human gene DAZH;DAZL;SPGYLA (NP_001342), a gene associated with {Spermatogenic failure, susceptibility to} (3).
BioGrid reports that CG4760 interacts with CG9972 CG4965 CG4965 Dmel CG34354 .
VDRC has 2 RNAi stocks for FBgn0011206 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 14 of 4 1.20None
Head12 22 of 4 0.60None
Eye8 21 of 4 0.43Down
Thoracicoabdominal ganglion16 33 of 4 0.80None
Salivary gland12 20 of 4 0.63None
Crop26 24 of 4 1.30None
Midgut18 33 of 4 0.90None
Tubule24 33 of 4 1.20None
Hindgut21 24 of 4 1.10None
Heart29 34 of 4 1.46None
Fat body14 34 of 4 0.74None
Ovary14 14 of 4 0.70None
Testis5 11 of 4 0.30Down
Male accessory glands20 24 of 4 1.00None
Virgin spermatheca6 00 of 4 0.31Down
Mated spermatheca3 10 of 4 0.16Down
Adult carcass68 214 of 4 3.50None
Larval CNS7 22 of 4 0.38Down
Larval Salivary gland1 00 of 4 0.08Down
Larval midgut12 21 of 4 0.62None
Larval tubule8 21 of 4 0.40Down
Larval hindgut38 24 of 4 1.93Up
Larval fat body4 10 of 4 0.20Down
Larval trachea5 20 of 4 0.29Down
Larval carcass55 44 of 4 2.77Up
S2 cells (growing)3 01 of 4 0.19Down
Whole fly19 24 of 4

Looking for CG4760-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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