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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG4781-RA through 18771 annotations produced 1 hits


(CG4781):

Annotation Number : CG4781
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035043
Gbrowse : chr2R:20528205-20529760 (-) // 100.0 //
Probeset : 1625816_at
Accessions : protein= NP_611951;, nucleotide= NM_138107;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0035043.
BDGP gene expression has embryonic in situ data for CG4781: 14 pix of staining in 3 body parts.
VDRC has 1 RNAi stocks for FBgn0035043 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head3 ± 20 of 4 0.10Down
Eye3 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.10Down
Salivary gland5 ± 30 of 4 0.12Down
Crop5 ± 10 of 4 0.10Down
Midgut694 ± 154 of 413.80Up
Tubule132 ± 114 of 4 2.60Up
Hindgut156 ± 54 of 4 3.10Up
Heart3 ± 00 of 4 0.07Down
Fat body3 ± 40 of 4 0.08Down
Ovary1 ± 00 of 4 0.00Down
Testis12 ± 34 of 4 0.30Down
Male accessory glands23 ± 40 of 4 0.50Down
Virgin spermatheca2 ± 10 of 4 0.05Down
Mated spermatheca1 ± 00 of 4 0.03Down
Adult carcass4 ± 10 of 4 0.10Down
Larval CNS3 ± 20 of 4 0.06Down
Larval Salivary gland7 ± 20 of 4 0.15Down
Larval midgut586 ± 314 of 411.64Up
Larval tubule92 ± 104 of 4 1.80Up
Larval hindgut153 ± 104 of 4 3.05Up
Larval fat body5 ± 10 of 4 0.10Down
Larval trachea0 ± 00 of 4 0.02Down
Larval carcass5 ± 00 of 4 0.11Down
S2 cells (growing)3 ± 10 of 4 0.07Down
Whole fly50 ± 64 of 4

Looking for CG4781-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime