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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG4784-RA through 18771 annotations produced 1 hits


CG4784 (Cpr72Ec):

Annotation Number : CG4784
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036619
Gbrowse : chr3L:16358990-16360426 (-) // 100.0 //
Probeset : 1626740_at
Accessions : protein= NP_648884;, nucleotide= NM_140627;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0036619.
BDGP gene expression has embryonic in situ data for CG4784: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0036619 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1616 ± 2124 of 423.70Up
Eye6411 ± 2764 of 493.98Up
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.05Down
Crop0 ± 00 of 4 0.00Down
Midgut4 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart4 ± 31 of 4 0.07Down
Fat body2 ± 10 of 4 0.04Down
Ovary2 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.03Down
Mated spermatheca0 ± 00 of 4 0.01Down
Adult carcass6 ± 50 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut2 ± 00 of 4 0.03Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea259 ± 5102 of 4 3.81None
Larval carcass2 ± 00 of 4 0.03Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly68 ± 94 of 4

Looking for CG4784-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime