FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4789-RB through 18771 annotations produced 2 hits

March 2006 (FlyBase/BDGP 5.3) (chrX:16695080-16695794 (+) // 100.0 //):

Annotation Number : CG4789
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1623679_at
Accessions : protein= , nucleotide=
BioGrid reports that CG4789 interacts with CG8506 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 1	4 of 4	1.00	None
Head	11 ± 2	2 of 4	1.00	None
Eye	3 ± 1	0 of 4	0.27	Down
Thoracicoabdominal ganglion	16 ± 2	3 of 4	1.40	None
Salivary gland	34 ± 11	0 of 4	2.83	None
Crop	10 ± 2	2 of 4	0.90	None
Midgut	26 ± 2	3 of 4	2.20	Up
Tubule	21 ± 1	2 of 4	1.80	Up
Hindgut	19 ± 1	4 of 4	1.60	Up
Heart	3 ± 1	0 of 4	0.29	Down
Fat body	16 ± 3	4 of 4	1.38	None
Ovary	11 ± 1	2 of 4	1.00	None
Testis	8 ± 2	1 of 4	0.70	None
Male accessory glands	19 ± 4	2 of 4	1.60	None
Virgin spermatheca	28 ± 5	3 of 4	2.31	None
Mated spermatheca	22 ± 3	2 of 4	1.88	None
Adult carcass	43 ± 16	3 of 4	3.60	None
Larval CNS	18 ± 4	4 of 4	1.51	Up
Larval Salivary gland	18 ± 1	0 of 4	1.49	Up
Larval midgut	33 ± 2	4 of 4	2.79	Up
Larval tubule	21 ± 0	4 of 4	1.70	Up
Larval hindgut	16 ± 1	4 of 4	1.35	None
Larval fat body	13 ± 2	1 of 4	1.10	None
Larval trachea	8 ± 1	1 of 4	0.66	None
Larval carcass	23 ± 3	4 of 4	1.91	Up
S2 cells (growing)	20 ± 0	2 of 4	1.70	Up
Whole fly	12 ± 1	1 of 4

March 2006 (FlyBase/BDGP 5.3) (chrX:16695080-16695794 (+) // 100.0 //):

Annotation Number : CG4789
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1635098_a_at
Accessions : protein= , nucleotide=
BioGrid reports that CG4789 interacts with CG8506 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	190 ± 4	4 of 4	1.40	Up
Head	160 ± 10	4 of 4	1.20	None
Eye	292 ± 11	4 of 4	2.13	Up
Thoracicoabdominal ganglion	136 ± 0	4 of 4	1.00	None
Salivary gland	252 ± 5	4 of 4	1.84	Up
Crop	139 ± 3	4 of 4	1.00	None
Midgut	142 ± 6	4 of 4	1.00	None
Tubule	125 ± 1	4 of 4	0.90	Down
Hindgut	143 ± 5	4 of 4	1.00	None
Heart	143 ± 12	4 of 4	1.05	None
Fat body	75 ± 9	4 of 4	0.55	Down
Ovary	180 ± 7	4 of 4	1.30	Up
Testis	71 ± 3	4 of 4	0.50	Down
Male accessory glands	195 ± 6	4 of 4	1.40	Up
Virgin spermatheca	38 ± 2	4 of 4	0.28	Down
Mated spermatheca	46 ± 3	4 of 4	0.34	Down
Adult carcass	108 ± 5	4 of 4	0.80	None
Larval CNS	173 ± 14	4 of 4	1.26	Up
Larval Salivary gland	269 ± 47	4 of 4	1.96	None
Larval midgut	100 ± 2	4 of 4	0.73	Down
Larval tubule	134 ± 3	4 of 4	1.00	None
Larval hindgut	120 ± 1	4 of 4	0.88	None
Larval fat body	134 ± 8	4 of 4	1.00	None
Larval trachea	281 ± 18	4 of 4	2.05	Up
Larval carcass	138 ± 9	4 of 4	1.01	None
S2 cells (growing)	329 ± 3	4 of 4	2.40	Up
Whole fly	137 ± 11	4 of 4

Looking for CG4789-RB. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720