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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4791-RA through 18771 annotations produced 1 hits



CG33302 (Cpr31A):

Annotation Number : CG4791
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053302
Gbrowse : chr2L:10049481-10055935 (+) // 100.0 //
Probeset : 1634115_a_at
Accessions : protein= NP_995678;, nucleotide= NM_205956;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0053302.
BDGP gene expression has embryonic in situ data for CG4791: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0053302 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.50None
Head5 ± 10 of 4 0.70None
Eye1 ± 00 of 4 0.23Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.20Down
Salivary gland17 ± 30 of 4 2.08None
Crop5 ± 20 of 4 0.60None
Midgut6 ± 20 of 4 0.70None
Tubule7 ± 10 of 4 0.90None
Hindgut6 ± 20 of 4 0.70None
Heart2 ± 10 of 4 0.32Down
Fat body7 ± 20 of 4 0.84None
Ovary5 ± 10 of 4 0.70None
Testis21 ± 34 of 4 2.60Up
Male accessory glands3 ± 00 of 4 0.40None
Virgin spermatheca7 ± 20 of 4 0.93None
Mated spermatheca6 ± 20 of 4 0.71None
Adult carcass7 ± 30 of 4 0.90None
Larval CNS4 ± 30 of 4 0.53None
Larval Salivary gland6 ± 20 of 4 0.71None
Larval midgut5 ± 10 of 4 0.60None
Larval tubule3 ± 00 of 4 0.40None
Larval hindgut7 ± 10 of 4 0.91None
Larval fat body10 ± 20 of 4 1.30None
Larval trachea23 ± 44 of 4 2.76Up
Larval carcass7 ± 20 of 4 0.84None
S2 cells (growing)5 ± 10 of 4 0.67None
Whole fly8 ± 10 of 4

Looking for CG4791-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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