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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4798-RA through 18771 annotations produced 1 hits



lethal (2) k01209 (l(2)k01209):

Annotation Number : CG4798
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022029
Gbrowse : chr2R:13307937-13313192 (+) // 100.0 //
Probeset : 1636958_s_at
Accessions : protein= NP_611206; /// NP_725672; /// NP_725673; /// NP_725674;, nucleotide= NM_137362; /// NM_166224; /// NM_166225; /// NM_166226;
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0004849 // uridine kinase activity // inferred
FlyMine data for FBgn0022029.
BioGrid reports that CG4798 interacts with CG5537 CG7818 CG5376 CG7757 CG8495 CG9986 .
TRiP has 1 RNAi stocks for FBgn0022029 available for purchase.
VDRC has 3 RNAi stocks for FBgn0022029 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain156 ± 84 of 4 0.70Down
Head174 ± 84 of 4 0.80Down
Eye247 ± 94 of 4 1.09None
Thoracicoabdominal ganglion170 ± 64 of 4 0.80Down
Salivary gland1364 ± 654 of 4 6.00Up
Crop271 ± 24 of 4 1.20Up
Midgut187 ± 114 of 4 0.80Down
Tubule362 ± 264 of 4 1.60Up
Hindgut298 ± 54 of 4 1.30Up
Heart163 ± 54 of 4 0.72Down
Fat body166 ± 114 of 4 0.73Down
Ovary357 ± 24 of 4 1.60Up
Testis39 ± 24 of 4 0.20Down
Male accessory glands238 ± 114 of 4 1.00None
Virgin spermatheca224 ± 54 of 4 0.99None
Mated spermatheca232 ± 104 of 4 1.02None
Adult carcass169 ± 74 of 4 0.70Down
Larval CNS285 ± 84 of 4 1.26Up
Larval Salivary gland855 ± 264 of 4 3.77Up
Larval midgut117 ± 44 of 4 0.52Down
Larval tubule465 ± 164 of 4 2.00Up
Larval hindgut249 ± 144 of 4 1.10None
Larval fat body38 ± 54 of 4 0.20Down
Larval trachea307 ± 414 of 4 1.35Up
Larval carcass197 ± 174 of 4 0.87None
S2 cells (growing)364 ± 54 of 4 1.60Up
Whole fly227 ± 44 of 4

Looking for CG4798-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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