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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4802-RA through 18771 annotations produced 1 hits



(CG4802):

Annotation Number : CG4802
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034215
Gbrowse : chr2R:13315224-13316816 (+) // 100.0 //
Probeset : 1634972_at
Accessions : protein= NP_611208;, nucleotide= NM_137364;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0034215.
VDRC has 3 RNAi stocks for FBgn0034215 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain162 44 of 4 0.40Down
Head427 134 of 4 1.10None
Eye278 104 of 4 0.73Down
Thoracicoabdominal ganglion142 64 of 4 0.40Down
Salivary gland245 124 of 4 0.64Down
Crop164 44 of 4 0.40Down
Midgut380 144 of 4 1.00None
Tubule1309 1404 of 4 3.40Up
Hindgut192 34 of 4 0.50Down
Heart541 144 of 4 1.41Up
Fat body912 774 of 4 2.38Up
Ovary459 54 of 4 1.20Up
Testis159 44 of 4 0.40Down
Male accessory glands400 134 of 4 1.00None
Virgin spermatheca1129 894 of 4 2.95Up
Mated spermatheca1121 944 of 4 2.93Up
Adult carcass497 144 of 4 1.30Up
Larval CNS324 124 of 4 0.85Down
Larval Salivary gland485 84 of 4 1.27Up
Larval midgut319 24 of 4 0.83Down
Larval tubule905 764 of 4 2.40Up
Larval hindgut210 64 of 4 0.55Down
Larval fat body1047 694 of 4 2.70Up
Larval trachea362 124 of 4 0.95None
Larval carcass191 84 of 4 0.50Down
S2 cells (growing)288 34 of 4 0.75Down
Whole fly383 144 of 4

Looking for CG4802-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime