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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG4810-RA through 18771 annotations produced 1 hits


(CG4810):

Annotation Number : CG4810
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037994
Gbrowse : chr3R:8018424-8020733 (-) // 100.0 //
Probeset : 1637989_at
Accessions : protein= NP_731675;, nucleotide= NM_169456;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 co
Interpro : 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // tran
FlyMine data for FBgn0037994.
BDGP gene expression has embryonic in situ data for CG4810: 4 pix of staining in 1 body parts.
BioGrid reports that CG4810 interacts with CG4892 CG7171 CG4918 .
VDRC has 2 RNAi stocks for FBgn0037994 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head4 ± 10 of 4 0.10Down
Eye3 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion9 ± 10 of 4 0.10Down
Salivary gland12 ± 40 of 4 0.19Down
Crop4 ± 20 of 4 0.10Down
Midgut5 ± 10 of 4 0.10Down
Tubule6 ± 10 of 4 0.10Down
Hindgut4 ± 10 of 4 0.10Down
Heart6 ± 20 of 4 0.10Down
Fat body9 ± 50 of 4 0.15Down
Ovary4 ± 10 of 4 0.10Down
Testis722 ± 64 of 410.80Up
Male accessory glands8 ± 20 of 4 0.10Down
Virgin spermatheca7 ± 20 of 4 0.11Down
Mated spermatheca7 ± 10 of 4 0.10Down
Adult carcass12 ± 30 of 4 0.20Down
Larval CNS3 ± 10 of 4 0.05Down
Larval Salivary gland9 ± 30 of 4 0.13Down
Larval midgut5 ± 20 of 4 0.07Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut5 ± 00 of 4 0.08Down
Larval fat body77 ± 354 of 4 1.20None
Larval trachea9 ± 61 of 4 0.15Down
Larval carcass10 ± 00 of 4 0.16Down
S2 cells (growing)2 ± 00 of 4 0.03Down
Whole fly67 ± 34 of 4

Looking for CG4810-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime