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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4813-RA through 18771 annotations produced 1 hits



(CG4813):

Annotation Number : CG4813
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039013
Gbrowse : chr3R:18550605-18552622 (-) // 100.0 //
Probeset : 1623742_at
Accessions : protein= NP_651088;, nucleotide= NM_142831;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0039013.
BDGP gene expression has embryonic in situ data for CG4813: 4 pix of staining in 1 body parts.
BioGrid reports that CG4813 interacts with CG6720 CG7057 .
VDRC has 1 RNAi stocks for FBgn0039013 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 ± 14 of 4 0.60Down
Head36 ± 24 of 4 0.40Down
Eye35 ± 24 of 4 0.42Down
Thoracicoabdominal ganglion41 ± 24 of 4 0.50Down
Salivary gland81 ± 24 of 4 0.97None
Crop36 ± 24 of 4 0.40Down
Midgut39 ± 24 of 4 0.50Down
Tubule29 ± 14 of 4 0.40Down
Hindgut36 ± 24 of 4 0.40Down
Heart24 ± 14 of 4 0.29Down
Fat body29 ± 34 of 4 0.35Down
Ovary208 ± 94 of 4 2.50Up
Testis29 ± 14 of 4 0.40Down
Male accessory glands94 ± 34 of 4 1.10None
Virgin spermatheca55 ± 24 of 4 0.65Down
Mated spermatheca55 ± 24 of 4 0.66Down
Adult carcass30 ± 30 of 4 0.40Down
Larval CNS115 ± 74 of 4 1.37Up
Larval Salivary gland94 ± 44 of 4 1.13None
Larval midgut27 ± 13 of 4 0.33Down
Larval tubule44 ± 24 of 4 0.50Down
Larval hindgut30 ± 14 of 4 0.36Down
Larval fat body39 ± 14 of 4 0.50Down
Larval trachea67 ± 44 of 4 0.80Down
Larval carcass39 ± 34 of 4 0.47Down
S2 cells (growing)63 ± 24 of 4 0.75Down
Whole fly84 ± 14 of 4

Looking for CG4813-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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