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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4814-RA through 18771 annotations produced 1 hits



CG15214 (CG34391):

Annotation Number : CG4814
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085420
Gbrowse : chr3L:5426106-5427377 (+) // 100.0 //
Probeset : 1636232_at
Accessions : protein= NP_001097508; /// NP_001137886;, nucleotide= NM_001104038; /// NM_001144414;
FlyMine data for FBgn0085420.
VDRC has 1 RNAi stocks for FBgn0085420 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 14 of 4 4.00Up
Head7 ± 13 of 4 1.50None
Eye5 ± 10 of 4 1.06None
Thoracicoabdominal ganglion20 ± 44 of 4 4.30Up
Salivary gland9 ± 10 of 4 1.94None
Crop5 ± 11 of 4 1.10None
Midgut7 ± 21 of 4 1.50None
Tubule6 ± 10 of 4 1.40None
Hindgut7 ± 11 of 4 1.60None
Heart3 ± 11 of 4 0.76None
Fat body5 ± 20 of 4 1.14None
Ovary4 ± 00 of 4 1.00None
Testis3 ± 11 of 4 0.80None
Male accessory glands8 ± 20 of 4 1.70None
Virgin spermatheca5 ± 01 of 4 1.03None
Mated spermatheca8 ± 22 of 4 1.76None
Adult carcass7 ± 10 of 4 1.40None
Larval CNS6 ± 14 of 4 1.32None
Larval Salivary gland6 ± 11 of 4 1.30None
Larval midgut8 ± 12 of 4 1.70None
Larval tubule5 ± 10 of 4 1.20None
Larval hindgut2 ± 00 of 4 0.57None
Larval fat body10 ± 31 of 4 2.10None
Larval trachea2 ± 20 of 4 0.52None
Larval carcass4 ± 02 of 4 0.93None
S2 cells (growing)7 ± 03 of 4 1.45None
Whole fly4 ± 11 of 4

Looking for CG4814-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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