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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG4818-RA through 18771 annotations produced 1 hits

CG4818 (Cpr72Ea):

Annotation Number : CG4818
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036617
Gbrowse : chr3L:16355702-16356780 (+) // 100.0 //
Probeset : 1638055_at
Accessions : protein= NP_648882;, nucleotide= NM_140625;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0036617.
BDGP gene expression has embryonic in situ data for CG4818: 4 pix of staining in 1 body parts.
BioGrid reports that CG4818 interacts with CG5890 CG7570 CG9354 CG5111 CG5190 CG5410 CG5460 CG6570 CG6745 CG6945 CG7104 CG7945 CG8086 CG8415 .
VDRC has 1 RNAi stocks for FBgn0036617 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 1.00None
Head5 10 of 4 1.20None
Eye5 11 of 4 1.22None
Thoracicoabdominal ganglion3 10 of 4 0.70None
Salivary gland6 20 of 4 1.37None
Crop4 10 of 4 1.00None
Midgut3 10 of 4 0.90None
Tubule2 00 of 4 0.50Down
Hindgut2 00 of 4 0.60None
Heart1 00 of 4 0.23None
Fat body5 31 of 4 1.16None
Ovary1 00 of 4 0.40None
Testis2 00 of 4 0.50None
Male accessory glands11 20 of 4 2.50Up
Virgin spermatheca4 10 of 4 0.98None
Mated spermatheca3 10 of 4 0.78None
Adult carcass10 10 of 4 2.50Up
Larval CNS5 20 of 4 1.20None
Larval Salivary gland10 02 of 4 2.44Up
Larval midgut3 10 of 4 0.68None
Larval tubule2 10 of 4 0.60None
Larval hindgut2 10 of 4 0.57None
Larval fat body3 10 of 4 0.80None
Larval trachea1 20 of 4 0.43None
Larval carcass2 10 of 4 0.55None
S2 cells (growing)3 10 of 4 0.88None
Whole fly4 10 of 4

Looking for CG4818-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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