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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4820-RA through 18771 annotations produced 1 hits



(CG4820):

Annotation Number : CG4820
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037876
Gbrowse : chr3R:7042334-7043620 (+) // 100.0 //
Probeset : 1637718_at
Accessions : protein= NP_001097748; /// NP_650050;, nucleotide= NM_001104278; /// NM_141793;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0037876.
Homophila reports that CG4820 is a close match (4e-11) to human gene MRX92;ZNF674 (NP_001034980), a gene associated with Mental retardation, X-linked-92 (3).
BioGrid reports that CG4820 interacts with CG4853 CG5303 CG5803 CG7928 CG8070 CG8361 CG8414 CG8415 CG9079 CG9723 .
VDRC has 3 RNAi stocks for FBgn0037876 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 ± 24 of 4 1.70Up
Head33 ± 34 of 4 1.20None
Eye59 ± 44 of 4 2.24Up
Thoracicoabdominal ganglion33 ± 24 of 4 1.20None
Salivary gland16 ± 10 of 4 0.60Down
Crop22 ± 22 of 4 0.80None
Midgut2 ± 00 of 4 0.10Down
Tubule14 ± 01 of 4 0.50Down
Hindgut24 ± 22 of 4 0.90None
Heart19 ± 23 of 4 0.74None
Fat body14 ± 30 of 4 0.56Down
Ovary45 ± 24 of 4 1.70Up
Testis50 ± 24 of 4 1.90Up
Male accessory glands13 ± 20 of 4 0.50Down
Virgin spermatheca15 ± 20 of 4 0.57Down
Mated spermatheca17 ± 21 of 4 0.66Down
Adult carcass28 ± 40 of 4 1.10None
Larval CNS33 ± 34 of 4 1.24Up
Larval Salivary gland10 ± 00 of 4 0.41Down
Larval midgut9 ± 10 of 4 0.35Down
Larval tubule14 ± 21 of 4 0.60Down
Larval hindgut18 ± 12 of 4 0.70Down
Larval fat body25 ± 51 of 4 0.90None
Larval trachea32 ± 44 of 4 1.21None
Larval carcass14 ± 20 of 4 0.54Down
S2 cells (growing)23 ± 04 of 4 0.89None
Whole fly26 ± 24 of 4

Looking for CG4820-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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