FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4821-RD through 18771 annotations produced 1 hits

Tequila (Tequila):

Annotation Number : CG4821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023479
Gbrowse : chr3L:9067757-9085225 (+) // 100.0 //
Probeset : 1624957_a_at
Accessions : protein= NP_001163393; /// NP_648288; /// NP_729451; /// NP_729452; /// NP_729453;, nucleotide= NM_001169922; /// NM_140031; /// NM_168314; /// NM_168315; /// NM_168316;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0016020 // membrane // inferred from electron
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0023479.
Homophila reports that CG4821 is a close match (3e-11) to human gene ELA2 (NP_001963), a gene associated with Hematopoiesis, cyclic, 162800 (3);Neutropenia, congenital, 202700 (3).
BioGrid reports that CG4821 interacts with CG4972 CG5180 CG5441 CG5676 CG5760 CG6283 CG8495 CG9593 CG9637 CG30425 .
TRiP has 1 RNAi stocks for FBgn0023479 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023479 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	369 ± 13	4 of 4	2.20	Up
Head	889 ± 79	4 of 4	5.20	Up
Eye	180 ± 58	4 of 4	1.05	None
Thoracicoabdominal ganglion	300 ± 8	4 of 4	1.80	Up
Salivary gland	15 ± 3	0 of 4	0.09	Down
Crop	26 ± 2	4 of 4	0.20	Down
Midgut	7 ± 1	1 of 4	0.00	Down
Tubule	61 ± 10	3 of 4	0.40	Down
Hindgut	78 ± 5	4 of 4	0.50	Down
Heart	462 ± 46	4 of 4	2.70	Up
Fat body	990 ± 256	4 of 4	5.78	Up
Ovary	3 ± 1	0 of 4	0.00	Down
Testis	3 ± 1	0 of 4	0.00	Down
Male accessory glands	1 ± 0	0 of 4	0.00	Down
Virgin spermatheca	1291 ± 85	4 of 4	7.54	Up
Mated spermatheca	871 ± 60	4 of 4	5.09	Up
Adult carcass	629 ± 56	4 of 4	3.70	Up
Larval CNS	6 ± 1	3 of 4	0.04	Down
Larval Salivary gland	30 ± 3	4 of 4	0.18	Down
Larval midgut	8 ± 1	2 of 4	0.05	Down
Larval tubule	18 ± 3	2 of 4	0.10	Down
Larval hindgut	7 ± 3	0 of 4	0.04	Down
Larval fat body	1185 ± 189	4 of 4	6.90	Up
Larval trachea	7 ± 4	2 of 4	0.04	Down
Larval carcass	8 ± 1	0 of 4	0.05	Down
S2 cells (growing)	1444 ± 49	4 of 4	8.44	Up
Whole fly	171 ± 16	4 of 4

Looking for CG4821-RD. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720