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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4824-RA through 18771 annotations produced 1 hits



Bicaudal-C (BicC):

Annotation Number : CG4824
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000182
Gbrowse : chr2L:16042031-16048626 (+) // 100.0 //
Probeset : 1631632_s_at
Accessions : protein= NP_476865; /// NP_723948; /// NP_723949;, nucleotide= NM_057517; /// NM_165144; /// NM_165145;
Pathway : 0005887 // integral to plasma membrane // non-traceable author statement
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from sequence or s
FlyMine data for FBgn0000182.
BioGrid reports that CG4824 interacts with CG5272 CG7057 CG6172 CG7056 CG7212 CG8368 CG10868 .
TRiP has 2 RNAi stocks for FBgn0000182 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000182 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.00Down
Head4 11 of 4 0.00Down
Eye9 01 of 4 0.01Down
Thoracicoabdominal ganglion8 01 of 4 0.00Down
Salivary gland20 30 of 4 0.03Down
Crop14 23 of 4 0.00Down
Midgut7 11 of 4 0.00Down
Tubule26 210 of 4 0.00Down
Hindgut5 20 of 4 0.00Down
Heart6 20 of 4 0.01Down
Fat body26 193 of 4 0.04Down
Ovary1501 204 of 4 2.30Up
Testis428 234 of 4 0.70Down
Male accessory glands4 00 of 4 0.00Down
Virgin spermatheca30 34 of 4 0.05Down
Mated spermatheca26 43 of 4 0.04Down
Adult carcass46 124 of 4 0.10Down
Larval CNS8 24 of 4 0.01Down
Larval Salivary gland6 11 of 4 0.01Down
Larval midgut12 42 of 4 0.02Down
Larval tubule5 10 of 4 0.00Down
Larval hindgut5 11 of 4 0.01Down
Larval fat body40 144 of 4 0.10Down
Larval trachea6 30 of 4 0.01Down
Larval carcass4 10 of 4 0.01Down
S2 cells (growing)5 10 of 4 0.01Down
Whole fly650 424 of 4

Looking for CG4824-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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