FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4827-RA through 18771 annotations produced 1 hits

veil (veil):

Annotation Number : CG4827
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034225
Gbrowse : chr2R:13366628-13369633 (+) // 100.0 //
Probeset : 1635447_at
Accessions : protein= NP_611217;, nucleotide= NM_137373;
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0008253 // 5'-nucleotidase activity // inferre
FlyMine data for FBgn0034225.
BDGP gene expression has embryonic in situ data for CG4827: 32 pix of staining in 9 body parts.
BioGrid reports that CG4827 interacts with CG5787 CG9894 .
VDRC has 3 RNAi stocks for FBgn0034225 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	1 of 4	0.00	Down
Head	58 ± 2	4 of 4	0.30	Down
Eye	7 ± 3	1 of 4	0.04	Down
Thoracicoabdominal ganglion	8 ± 1	0 of 4	0.10	Down
Salivary gland	55 ± 6	3 of 4	0.33	Down
Crop	2 ± 0	0 of 4	0.00	Down
Midgut	1425 ± 36	4 of 4	8.40	Up
Tubule	514 ± 26	4 of 4	3.00	Up
Hindgut	168 ± 17	4 of 4	1.00	None
Heart	39 ± 1	4 of 4	0.23	Down
Fat body	13 ± 5	0 of 4	0.08	Down
Ovary	59 ± 8	4 of 4	0.40	Down
Testis	84 ± 1	4 of 4	0.50	Down
Male accessory glands	88 ± 11	4 of 4	0.50	Down
Virgin spermatheca	5 ± 1	0 of 4	0.03	Down
Mated spermatheca	11 ± 0	0 of 4	0.07	Down
Adult carcass	25 ± 3	0 of 4	0.10	Down
Larval CNS	4 ± 1	0 of 4	0.02	Down
Larval Salivary gland	1544 ± 77	4 of 4	9.12	Up
Larval midgut	832 ± 61	4 of 4	4.91	Up
Larval tubule	705 ± 16	4 of 4	4.20	Up
Larval hindgut	246 ± 18	4 of 4	1.45	Up
Larval fat body	17 ± 3	0 of 4	0.10	Down
Larval trachea	38 ± 9	4 of 4	0.23	Down
Larval carcass	541 ± 119	4 of 4	3.19	None
S2 cells (growing)	31 ± 2	4 of 4	0.19	Down
Whole fly	169 ± 12	4 of 4

Looking for CG4827-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720