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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4829-RB through 18771 annotations produced 1 hits



(CG4829):

Annotation Number : CG4829
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030796
Gbrowse : chrX:16705732-16720529 (+) // 100.0 //
Probeset : 1638807_s_at
Accessions : protein= NP_001097004; /// NP_001097005; /// NP_573170; /// NP_728029; /// NP_728030;, nucleotide= NM_001103534; /// NM_001103535; /// NM_132942; /// NM_167549; /// NM_167550;
Interpro : 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from sequence or structural similarity /// 0
FlyMine data for FBgn0030796.
BDGP gene expression has embryonic in situ data for CG4829: 42 pix of staining in 9 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain571 104 of 417.70Up
Head212 64 of 4 6.60Up
Eye23 14 of 4 0.73Down
Thoracicoabdominal ganglion770 204 of 423.90Up
Salivary gland40 52 of 4 1.24None
Crop199 94 of 4 6.20Up
Midgut52 34 of 4 1.60Up
Tubule21 04 of 4 0.70Down
Hindgut109 64 of 4 3.40Up
Heart151 134 of 4 4.69Up
Fat body32 34 of 4 1.01None
Ovary6 10 of 4 0.20Down
Testis37 34 of 4 1.20None
Male accessory glands32 24 of 4 1.00None
Virgin spermatheca25 14 of 4 0.79Down
Mated spermatheca27 24 of 4 0.84None
Adult carcass38 44 of 4 1.20None
Larval CNS129 194 of 4 4.02Up
Larval Salivary gland245 194 of 4 7.60Up
Larval midgut65 54 of 4 2.02Up
Larval tubule27 22 of 4 0.80None
Larval hindgut106 84 of 4 3.29Up
Larval fat body23 23 of 4 0.70None
Larval trachea85 134 of 4 2.65Up
Larval carcass148 64 of 4 4.60Up
S2 cells (growing)369 154 of 411.45Up
Whole fly32 24 of 4

Looking for CG4829-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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