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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4832-RA through 18771 annotations produced 1 hits



oblivious (cnn):

Annotation Number : CG4832
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013765
Gbrowse : chr2R:9326815-9337990 (-) // 100.0 //
Probeset : 1635619_a_at
Accessions : protein= NP_001014523; /// NP_001033944; /// NP_001163141; /// NP_477084; /// NP_725297; /// NP_725298;, nucleotide= NM_001014523; /// NM_001038855; /// NM_001169670; /// NM_057736; /// NM_165990; /// NM_165991;
Pathway : 0000242 // pericentriolar material // inferred from direct assay /// 0000242 // pericentriolar material // non-traceable
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from se
FlyMine data for FBgn0013765.
BioGrid reports that CG4832 interacts with CG9949 CG5461 CG5674 CG5848 CG5859 CG6156 CG6477 CG7610 CG7757 CG8301 CG8479 CG8609 CG8851 CG9045 CG9083 CG9277 CG9893 CG9933 CG9951 .
TRiP has 2 RNAi stocks for FBgn0013765 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013765 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain255 24 of 4 1.70Up
Head84 04 of 4 0.60Down
Eye81 114 of 4 0.54Down
Thoracicoabdominal ganglion267 84 of 4 1.80Up
Salivary gland30 24 of 4 0.20Down
Crop100 34 of 4 0.70Down
Midgut39 54 of 4 0.30Down
Tubule21 33 of 4 0.10Down
Hindgut70 24 of 4 0.50Down
Heart77 14 of 4 0.51Down
Fat body62 74 of 4 0.41Down
Ovary304 34 of 4 2.00Up
Testis13 14 of 4 0.10Down
Male accessory glands22 24 of 4 0.20Down
Virgin spermatheca99 74 of 4 0.65Down
Mated spermatheca77 44 of 4 0.51Down
Adult carcass115 24 of 4 0.80Down
Larval CNS372 304 of 4 2.45Up
Larval Salivary gland19 24 of 4 0.13Down
Larval midgut28 44 of 4 0.19Down
Larval tubule5 22 of 4 0.00Down
Larval hindgut26 34 of 4 0.17Down
Larval fat body68 64 of 4 0.50Down
Larval trachea28 34 of 4 0.19Down
Larval carcass81 104 of 4 0.54Down
S2 cells (growing)337 54 of 4 2.22Up
Whole fly151 114 of 4

Looking for CG4832-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime