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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4839-RB through 18771 annotations produced 1 hits



PKG-like (CG4839):

Annotation Number : CG4839
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032187
Gbrowse : chr2L:10144849-10155510 (+) // 100.0 //
Probeset : 1638905_s_at
Accessions : protein= NP_609349; /// NP_723525;, nucleotide= NM_135505; /// NM_164890;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0032187.
BDGP gene expression has embryonic in situ data for CG4839: 8 pix of staining in 2 body parts.
Homophila reports that CG4839 is a close match (5e-11) to human gene CDS1;CHEK2;CHK2;LFS2;RAD53 (NP_665861), a gene associated with Li-Fraumeni syndrome, 609265 (3);Osteosarcoma, somatic, 259500 (3);Prostate cancer, familial, 176807 (3);{Breast and colorectal cancer, susceptibility to} (3);{Breast cancer, susceptibility to}, 114480 (3).
TRiP has 1 RNAi stocks for FBgn0032187 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032187 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye16 ± 23 of 4 0.33Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland1009 ± 494 of 419.96Up
Crop9 ± 20 of 4 0.20Down
Midgut423 ± 94 of 4 8.40Up
Tubule98 ± 84 of 4 2.00Up
Hindgut57 ± 34 of 4 1.10None
Heart1 ± 10 of 4 0.03Down
Fat body1 ± 00 of 4 0.03Down
Ovary9 ± 01 of 4 0.20Down
Testis9 ± 04 of 4 0.20Down
Male accessory glands236 ± 124 of 4 4.70Up
Virgin spermatheca52 ± 24 of 4 1.04None
Mated spermatheca56 ± 84 of 4 1.11None
Adult carcass10 ± 30 of 4 0.20Down
Larval CNS3 ± 10 of 4 0.06Down
Larval Salivary gland734 ± 574 of 414.52Up
Larval midgut242 ± 544 of 4 4.79Up
Larval tubule51 ± 14 of 4 1.00None
Larval hindgut53 ± 74 of 4 1.05None
Larval fat body0 ± 00 of 4 0.00Down
Larval trachea10 ± 22 of 4 0.21Down
Larval carcass6 ± 10 of 4 0.13Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly50 ± 34 of 4

Looking for CG4839-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime