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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG4846-RA through 18771 annotations produced 1 hits

triclops (beat-Ia):

Annotation Number : CG4846
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013433
Gbrowse : chr2L:16049994-16081688 (+) // 100.0 //
Probeset : 1631378_at
Accessions : protein= NP_477508;, nucleotide= NM_058160;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0013433.
BDGP gene expression has embryonic in situ data for beat-Ia: 4 pix of staining in 1 body parts.
BioGrid reports that CG4846 interacts with CG6904 CG7379 CG2328 CG3665 CG4838 .
VDRC has 4 RNAi stocks for FBgn0013433 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 84 of 424.40Up
Head37 24 of 4 5.80Up
Eye6 12 of 4 0.95None
Thoracicoabdominal ganglion249 34 of 438.20Up
Salivary gland3 10 of 4 0.48None
Crop2 10 of 4 0.40Down
Midgut1 10 of 4 0.30Down
Tubule2 00 of 4 0.40Down
Hindgut1 00 of 4 0.20Down
Heart2 10 of 4 0.32Down
Fat body4 11 of 4 0.72None
Ovary1 00 of 4 0.20Down
Testis3 01 of 4 0.50Down
Male accessory glands1 00 of 4 0.30Down
Virgin spermatheca2 10 of 4 0.38None
Mated spermatheca5 00 of 4 0.85None
Adult carcass4 21 of 4 0.60None
Larval CNS168 224 of 425.89Up
Larval Salivary gland1 00 of 4 0.26Down
Larval midgut1 00 of 4 0.28Down
Larval tubule3 10 of 4 0.60None
Larval hindgut1 00 of 4 0.21Down
Larval fat body1 00 of 4 0.20Down
Larval trachea3 10 of 4 0.49Down
Larval carcass1 00 of 4 0.19Down
S2 cells (growing)1 00 of 4 0.20Down
Whole fly6 03 of 4

Looking for CG4846-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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