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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4858-RA through 18771 annotations produced 1 hits



(CG4858):

Annotation Number : CG4858
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037011
Gbrowse : chr3L:20519753-20520921 (+) // 100.0 //
Probeset : 1625315_at
Accessions : protein= NP_649243;, nucleotide= NM_140986;
Interpro : "0000166 // nucleotide binding // inferred from sequence or structural similarity /// 0000166 // nucleotide binding // i
FlyMine data for FBgn0037011.
BDGP gene expression has embryonic in situ data for CG4858: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037011 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain192 ± 34 of 4 0.90None
Head296 ± 44 of 4 1.40Up
Eye459 ± 164 of 4 2.11Up
Thoracicoabdominal ganglion198 ± 34 of 4 0.90None
Salivary gland493 ± 224 of 4 2.27Up
Crop310 ± 64 of 4 1.40Up
Midgut305 ± 144 of 4 1.40Up
Tubule588 ± 204 of 4 2.70Up
Hindgut513 ± 134 of 4 2.40Up
Heart410 ± 184 of 4 1.89Up
Fat body389 ± 314 of 4 1.79Up
Ovary194 ± 24 of 4 0.90None
Testis55 ± 04 of 4 0.30Down
Male accessory glands392 ± 54 of 4 1.80Up
Virgin spermatheca447 ± 94 of 4 2.06Up
Mated spermatheca438 ± 84 of 4 2.02Up
Adult carcass322 ± 144 of 4 1.50Up
Larval CNS217 ± 34 of 4 1.00None
Larval Salivary gland355 ± 164 of 4 1.63Up
Larval midgut222 ± 14 of 4 1.02None
Larval tubule504 ± 254 of 4 2.30Up
Larval hindgut232 ± 104 of 4 1.07None
Larval fat body565 ± 844 of 4 2.60Up
Larval trachea384 ± 154 of 4 1.77Up
Larval carcass254 ± 104 of 4 1.17Up
S2 cells (growing)378 ± 44 of 4 1.74Up
Whole fly217 ± 84 of 4

Looking for CG4858-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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