Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4859-RA through 18771 annotations produced 1 hits



Matrix metalloproteinase 1 (Mmp1):

Annotation Number : CG4859
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035049
Gbrowse : chr2R:20558816-20574897 (-) // 100.0 //
Probeset : 1623160_at
Accessions : protein= NP_523852; /// NP_726473;, nucleotide= NM_079128; /// NM_166683;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035071 // salivary gland cell autophagic cell death // infe
Interpro : open tracheal system // inferred from mutant phenotype /// 0048102 // autophagic cell death // inferred from expression
FlyMine data for FBgn0035049.
BDGP gene expression has embryonic in situ data for Mmp1: 19 pix of staining in 4 body parts.
Homophila reports that CG4859 is a close match (2e-11) to human gene CACP;HAPO;MSF;PRG4;SZP (NP_005798), a gene associated with Camptodactyly-arthropathy-coxa vara-pericarditis syndrome, 208250 (3).
BioGrid reports that CG4859 interacts with CG6281 CG1794 .
TRiP has 1 RNAi stocks for FBgn0035049 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035049 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 ± 104 of 4 0.60Down
Head118 ± 114 of 4 1.50Up
Eye19 ± 04 of 4 0.25Down
Thoracicoabdominal ganglion84 ± 24 of 4 1.10None
Salivary gland38 ± 14 of 4 0.48Down
Crop79 ± 94 of 4 1.00None
Midgut400 ± 124 of 4 5.00Up
Tubule308 ± 174 of 4 3.80Up
Hindgut403 ± 434 of 4 5.00Up
Heart27 ± 54 of 4 0.34Down
Fat body49 ± 64 of 4 0.61Down
Ovary5 ± 13 of 4 0.10Down
Testis28 ± 24 of 4 0.30Down
Male accessory glands22 ± 103 of 4 0.30Down
Virgin spermatheca49 ± 94 of 4 0.61Down
Mated spermatheca62 ± 64 of 4 0.78None
Adult carcass99 ± 64 of 4 1.20None
Larval CNS57 ± 74 of 4 0.71Down
Larval Salivary gland47 ± 154 of 4 0.59None
Larval midgut578 ± 184 of 4 7.18Up
Larval tubule886 ± 654 of 411.00Up
Larval hindgut446 ± 154 of 4 5.55Up
Larval fat body166 ± 274 of 4 2.10Up
Larval trachea134 ± 304 of 4 1.67Up
Larval carcass331 ± 524 of 4 4.12Up
S2 cells (growing)787 ± 834 of 4 9.78Up
Whole fly80 ± 74 of 4

Looking for CG4859-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime