Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4860-RA through 18771 annotations produced 1 hits



(CG4860):

Annotation Number : CG4860
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037999
Gbrowse : chr3R:8045598-8047185 (-) // 100.0 //
Probeset : 1634241_at
Accessions : protein= NP_650163;, nucleotide= NM_141906;
Interpro : "0003995 // acyl-CoA dehydrogenase activity // inferred from sequence or structural similarity /// 0003995 // acyl-CoA d
FlyMine data for FBgn0037999.
BDGP gene expression has embryonic in situ data for CG4860: 12 pix of staining in 3 body parts.
Homophila reports that CG4860 is a close match (5e-37) to human gene GCDH (NP_039663), a gene associated with Glutaricaciduria, type I, 231670 (3).
VDRC has 2 RNAi stocks for FBgn0037999 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 21 of 4 0.20Down
Head34 ± 34 of 4 0.60Down
Eye20 ± 33 of 4 0.35Down
Thoracicoabdominal ganglion16 ± 00 of 4 0.30Down
Salivary gland41 ± 74 of 4 0.70None
Crop124 ± 94 of 4 2.10Up
Midgut61 ± 44 of 4 1.00None
Tubule92 ± 24 of 4 1.60Up
Hindgut52 ± 34 of 4 0.90None
Heart98 ± 84 of 4 1.67Up
Fat body120 ± 184 of 4 2.04Up
Ovary112 ± 44 of 4 1.90Up
Testis17 ± 10 of 4 0.30Down
Male accessory glands29 ± 51 of 4 0.50Down
Virgin spermatheca44 ± 24 of 4 0.76Down
Mated spermatheca58 ± 14 of 4 0.99None
Adult carcass83 ± 64 of 4 1.40Up
Larval CNS71 ± 74 of 4 1.22None
Larval Salivary gland94 ± 84 of 4 1.60Up
Larval midgut70 ± 74 of 4 1.20None
Larval tubule56 ± 24 of 4 1.00None
Larval hindgut133 ± 104 of 4 2.27Up
Larval fat body167 ± 204 of 4 2.80Up
Larval trachea189 ± 114 of 4 3.22Up
Larval carcass157 ± 194 of 4 2.68Up
S2 cells (growing)280 ± 54 of 4 4.76Up
Whole fly59 ± 44 of 4

Looking for CG4860-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime