FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4863-RC through 18771 annotations produced 1 hits

Ribosomal protein L3 (RpL3):

Annotation Number : CG4863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020910
Gbrowse : chr3R:7047890-7049171 (+) // 100.0 //
Probeset : 1625889_at
Accessions : protein= NP_524316; /// NP_731547; /// NP_731548; /// NP_731549; /// NP_731550;, nucleotide= NM_079592; /// NM_169377; /// NM_169378; /// NM_169379; /// NM_169380;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0020910.
BDGP gene expression has embryonic in situ data for RpL3: 32 pix of staining in 21 body parts.
BioGrid reports that CG4863 interacts with CG4896 CG4998 CG5053 CG5346 CG6378 CG6443 CG6621 CG7196 CG7524 CG7570 CG7809 CG8349 CG8764 CG8942 CG9572 .
TRiP has 1 RNAi stocks for FBgn0020910 available for purchase.
VDRC has 4 RNAi stocks for FBgn0020910 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	66 ± 3	4 of 4	0.50	Down
Head	57 ± 6	4 of 4	0.50	Down
Eye	31 ± 3	4 of 4	0.26	Down
Thoracicoabdominal ganglion	38 ± 4	4 of 4	0.30	Down
Salivary gland	125 ± 5	4 of 4	1.03	None
Crop	107 ± 6	4 of 4	0.90	None
Midgut	141 ± 10	4 of 4	1.20	None
Tubule	43 ± 7	4 of 4	0.40	Down
Hindgut	59 ± 3	4 of 4	0.50	Down
Heart	61 ± 5	4 of 4	0.51	Down
Fat body	97 ± 26	4 of 4	0.80	None
Ovary	153 ± 6	4 of 4	1.30	Up
Testis	8 ± 0	1 of 4	0.10	Down
Male accessory glands	321 ± 50	4 of 4	2.60	Up
Virgin spermatheca	27 ± 2	4 of 4	0.23	Down
Mated spermatheca	31 ± 4	4 of 4	0.26	Down
Adult carcass	86 ± 4	4 of 4	0.70	Down
Larval CNS	107 ± 8	4 of 4	0.89	None
Larval Salivary gland	142 ± 8	4 of 4	1.17	None
Larval midgut	35 ± 2	4 of 4	0.29	Down
Larval tubule	36 ± 5	4 of 4	0.30	Down
Larval hindgut	66 ± 10	4 of 4	0.54	Down
Larval fat body	41 ± 3	4 of 4	0.30	Down
Larval trachea	151 ± 17	4 of 4	1.24	Up
Larval carcass	145 ± 18	4 of 4	1.20	None
S2 cells (growing)	461 ± 22	4 of 4	3.79	Up
Whole fly	121 ± 7	4 of 4

Looking for CG4863-RC. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720