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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4869-RA through 18771 annotations produced 1 hits



beta-Tubulin (betaTub97EF):

Annotation Number : CG4869
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003890
Gbrowse : chr3R:23792729-23814089 (-) // 100.0 //
Probeset : 1625885_at
Accessions : protein= NP_001163753; /// NP_651606;, nucleotide= NM_001170282; /// NM_143349;
Pathway : 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // inferred from sequence or st
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0003890.
Homophila reports that CG4869 is a close match (2e-52) to human gene LIS3;TUBA1A;TUBA3 (NP_006000), a gene associated with Lissencephaly 3, 611603 (3).
VDRC has 1 RNAi stocks for FBgn0003890 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain216 124 of 4 0.80None
Head474 144 of 4 1.80Up
Eye767 534 of 4 2.94Up
Thoracicoabdominal ganglion232 124 of 4 0.90None
Salivary gland150 114 of 4 0.57Down
Crop337 64 of 4 1.30Up
Midgut736 234 of 4 2.80Up
Tubule841 244 of 4 3.20Up
Hindgut605 54 of 4 2.30Up
Heart737 294 of 4 2.82Up
Fat body729 634 of 4 2.80Up
Ovary78 74 of 4 0.30Down
Testis33 04 of 4 0.10Down
Male accessory glands464 124 of 4 1.80Up
Virgin spermatheca524 114 of 4 2.01Up
Mated spermatheca532 364 of 4 2.04Up
Adult carcass518 174 of 4 2.00Up
Larval CNS200 204 of 4 0.77Down
Larval Salivary gland205 54 of 4 0.79None
Larval midgut1146 1104 of 4 4.39Up
Larval tubule408 74 of 4 1.60Up
Larval hindgut787 594 of 4 3.01Up
Larval fat body52 73 of 4 0.20Down
Larval trachea143 124 of 4 0.55Down
Larval carcass513 614 of 4 1.97Up
S2 cells (growing)49 34 of 4 0.19Down
Whole fly261 204 of 4

Looking for CG4869-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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