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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4881-RA through 18771 annotations produced 1 hits



sal-related (salr):

Annotation Number : CG4881
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000287
Gbrowse : chr2L:11365304-11373397 (+) // 100.0 //
Probeset : 1639732_s_at
Accessions : protein= NP_523548; /// NP_723669;, nucleotide= NM_078824; /// NM_164965;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcr
FlyMine data for FBgn0000287.
BDGP gene expression has embryonic in situ data for salr: 30 pix of staining in 10 body parts.
Homophila reports that CG4881 is a close match (5e-11) to human gene SLUG;SNAI2;WS2D (NP_003059), a gene associated with Melanoma metastasis, modification of (1);Piebaldism, 172800 (3);Waardenburg syndrome, type IID, 608890 (3).
TRiP has 1 RNAi stocks for FBgn0000287 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000287 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 14 of 4 3.10Up
Head17 03 of 4 1.00None
Eye62 64 of 4 3.68Up
Thoracicoabdominal ganglion73 64 of 4 4.30Up
Salivary gland9 40 of 4 0.55None
Crop4 20 of 4 0.30None
Midgut5 10 of 4 0.30None
Tubule3 00 of 4 0.20Down
Hindgut13 10 of 4 0.80None
Heart6 00 of 4 0.37None
Fat body8 20 of 4 0.48None
Ovary0 00 of 4 0.00Down
Testis160 34 of 4 9.40Up
Male accessory glands6 10 of 4 0.40None
Virgin spermatheca6 10 of 4 0.39None
Mated spermatheca4 10 of 4 0.24Down
Adult carcass15 40 of 4 0.90None
Larval CNS73 124 of 4 4.31Up
Larval Salivary gland5 21 of 4 0.32None
Larval midgut6 10 of 4 0.35None
Larval tubule1 00 of 4 0.10Down
Larval hindgut17 11 of 4 1.04None
Larval fat body19 51 of 4 1.10None
Larval trachea106 34 of 4 6.27Up
Larval carcass7 10 of 4 0.44None
S2 cells (growing)2 10 of 4 0.15Down
Whole fly17 42 of 4

Looking for CG4881-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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