FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4881-RA through 18771 annotations produced 1 hits

sal-related (salr):

Annotation Number : CG4881
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000287
Gbrowse : chr2L:11365304-11373397 (+) // 100.0 //
Probeset : 1639732_s_at
Accessions : protein= NP_523548; /// NP_723669;, nucleotide= NM_078824; /// NM_164965;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcr
FlyMine data for FBgn0000287.
BDGP gene expression has embryonic in situ data for salr: 30 pix of staining in 10 body parts.
Homophila reports that CG4881 is a close match (5e-11) to human gene SLUG;SNAI2;WS2D (NP_003059), a gene associated with Melanoma metastasis, modification of (1);Piebaldism, 172800 (3);Waardenburg syndrome, type IID, 608890 (3).
TRiP has 1 RNAi stocks for FBgn0000287 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000287 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	52 ± 1	4 of 4	3.10	Up
Head	17 ± 0	3 of 4	1.00	None
Eye	62 ± 6	4 of 4	3.68	Up
Thoracicoabdominal ganglion	73 ± 6	4 of 4	4.30	Up
Salivary gland	9 ± 4	0 of 4	0.55	None
Crop	4 ± 2	0 of 4	0.30	None
Midgut	5 ± 1	0 of 4	0.30	None
Tubule	3 ± 0	0 of 4	0.20	Down
Hindgut	13 ± 1	0 of 4	0.80	None
Heart	6 ± 0	0 of 4	0.37	None
Fat body	8 ± 2	0 of 4	0.48	None
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	160 ± 3	4 of 4	9.40	Up
Male accessory glands	6 ± 1	0 of 4	0.40	None
Virgin spermatheca	6 ± 1	0 of 4	0.39	None
Mated spermatheca	4 ± 1	0 of 4	0.24	Down
Adult carcass	15 ± 4	0 of 4	0.90	None
Larval CNS	73 ± 12	4 of 4	4.31	Up
Larval Salivary gland	5 ± 2	1 of 4	0.32	None
Larval midgut	6 ± 1	0 of 4	0.35	None
Larval tubule	1 ± 0	0 of 4	0.10	Down
Larval hindgut	17 ± 1	1 of 4	1.04	None
Larval fat body	19 ± 5	1 of 4	1.10	None
Larval trachea	106 ± 3	4 of 4	6.27	Up
Larval carcass	7 ± 1	0 of 4	0.44	None
S2 cells (growing)	2 ± 1	0 of 4	0.15	Down
Whole fly	17 ± 4	2 of 4

Looking for CG4881-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720