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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4882-RA through 18771 annotations produced 1 hits



undefined 1 (CG4882):

Annotation Number : CG4882
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025336
Gbrowse : chr2R:19768339-19769954 (-) // 100.0 //
Probeset : 1639123_at
Accessions : protein= NP_477377;, nucleotide= NM_058029;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0025336.
BDGP gene expression has embryonic in situ data for CG4882: 12 pix of staining in 9 body parts.
VDRC has 2 RNAi stocks for FBgn0025336 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain290 54 of 4 1.40Up
Head160 54 of 4 0.80Down
Eye100 64 of 4 0.48Down
Thoracicoabdominal ganglion325 84 of 4 1.60Up
Salivary gland235 134 of 4 1.14None
Crop172 34 of 4 0.80Down
Midgut142 54 of 4 0.70Down
Tubule165 104 of 4 0.80Down
Hindgut194 144 of 4 0.90None
Heart150 64 of 4 0.73Down
Fat body169 224 of 4 0.82Down
Ovary332 74 of 4 1.60Up
Testis87 24 of 4 0.40Down
Male accessory glands253 144 of 4 1.20Up
Virgin spermatheca136 74 of 4 0.66Down
Mated spermatheca137 24 of 4 0.67Down
Adult carcass150 64 of 4 0.70Down
Larval CNS232 124 of 4 1.12Up
Larval Salivary gland198 84 of 4 0.96None
Larval midgut96 64 of 4 0.46Down
Larval tubule126 34 of 4 0.60Down
Larval hindgut192 94 of 4 0.93None
Larval fat body114 114 of 4 0.60Down
Larval trachea181 174 of 4 0.88None
Larval carcass170 314 of 4 0.83None
S2 cells (growing)227 54 of 4 1.10None
Whole fly206 84 of 4

Looking for CG4882-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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