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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4886-RA through 18771 annotations produced 1 hits



cyclophilin-33 (cyp33):

Annotation Number : CG4886
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028382
Gbrowse : chr2R:13432396-13433906 (+) // 100.0 //
Probeset : 1623009_at
Accessions : protein= NP_523773;, nucleotide= NM_079049;
Pathway : via spliceosome // inferred by curator /// 0006457 // protein folding // inferred from electronic annotation /// 000645
Interpro : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0028382.
BDGP gene expression has embryonic in situ data for cyp33: 14 pix of staining in 19 body parts.
TRiP has 1 RNAi stocks for FBgn0028382 available for purchase.
VDRC has 1 RNAi stocks for FBgn0028382 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain141 14 of 4 1.20Up
Head95 24 of 4 0.80Down
Eye78 54 of 4 0.68Down
Thoracicoabdominal ganglion132 74 of 4 1.10None
Salivary gland127 104 of 4 1.10None
Crop116 34 of 4 1.00None
Midgut101 14 of 4 0.90Down
Tubule166 54 of 4 1.40Up
Hindgut115 44 of 4 1.00None
Heart65 44 of 4 0.56Down
Fat body97 14 of 4 0.84Down
Ovary208 64 of 4 1.80Up
Testis49 14 of 4 0.40Down
Male accessory glands137 124 of 4 1.20None
Virgin spermatheca82 44 of 4 0.71Down
Mated spermatheca78 34 of 4 0.67Down
Adult carcass58 14 of 4 0.50Down
Larval CNS288 104 of 4 2.49Up
Larval Salivary gland183 44 of 4 1.58Up
Larval midgut89 34 of 4 0.77Down
Larval tubule400 144 of 4 3.50Up
Larval hindgut126 44 of 4 1.09None
Larval fat body123 114 of 4 1.10None
Larval trachea147 154 of 4 1.27Up
Larval carcass117 24 of 4 1.02None
S2 cells (growing)163 34 of 4 1.41Up
Whole fly115 44 of 4

Looking for CG4886-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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