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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4887-RA through 18771 annotations produced 1 hits



(CG4887):

Annotation Number : CG4887
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031318
Gbrowse : chr2L:1173010-1177500 (+) // 100.0 //
Probeset : 1639599_at
Accessions : protein= NP_608582;, nucleotide= NM_134738;
Pathway : via spliceosome // inferred by curator"
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0071011 // precatalytic spliceosome // inferred from
FlyMine data for FBgn0031318.
BDGP gene expression has embryonic in situ data for CG4887: 4 pix of staining in 1 body parts.
BioGrid reports that CG4887 interacts with CG5094 CG5225 CG5271 CG5468 CG5674 CG8368 CG9184 CG9527 CG9769 .
VDRC has 4 RNAi stocks for FBgn0031318 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain539 244 of 4 6.10Up
Head83 24 of 4 0.90None
Eye110 84 of 4 1.25None
Thoracicoabdominal ganglion417 154 of 4 4.70Up
Salivary gland100 84 of 4 1.14None
Crop110 24 of 4 1.30Up
Midgut112 34 of 4 1.30Up
Tubule147 44 of 4 1.70Up
Hindgut111 34 of 4 1.30Up
Heart76 64 of 4 0.87None
Fat body73 74 of 4 0.83None
Ovary133 34 of 4 1.50Up
Testis32 04 of 4 0.40Down
Male accessory glands175 104 of 4 2.00Up
Virgin spermatheca93 24 of 4 1.06None
Mated spermatheca85 94 of 4 0.97None
Adult carcass79 54 of 4 0.90None
Larval CNS191 104 of 4 2.17Up
Larval Salivary gland139 54 of 4 1.58Up
Larval midgut71 44 of 4 0.80None
Larval tubule111 14 of 4 1.30Up
Larval hindgut90 44 of 4 1.02None
Larval fat body72 44 of 4 0.80None
Larval trachea131 74 of 4 1.49Up
Larval carcass100 34 of 4 1.14None
S2 cells (growing)213 24 of 4 2.41Up
Whole fly88 64 of 4

Looking for CG4887-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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