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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4889-RA through 18771 annotations produced 1 hits



chr2L:7307160-7316255 (+) // 100.0 // (Wingless):

Annotation Number : CG4889
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632868_a_at
Accessions : protein= , nucleotide= NP_523502; /// NP_723268;
Pathway : "0001745 // compound eye morphogenesis // inferred from mutant phenotype /// 0002168 // instar larval development // tra
Interpro : calcium modulating pathway // inferred from direct assay /// 0007223 // Wnt receptor signaling pathway
FlyMine data for full length.
Homophila reports that CG4889 is a close match (2e-32) to human gene WNT10A (NP_079492), a gene associated with Odontoonychodermal dysplasia, 257980 (3).
BioGrid reports that CG4889 interacts with CG8376 CG8376 CG11579 CG11579 CG11579 CG11579 CG5912 CG3578 CG4379 CG9012 CG5102 CG5102 CG3093 CG9885 CG9885 CG9885 CG9885 CG9885 CG9885 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG17697 CG17697 CG17697 CG17697 CG17697 CG17697 CG17697 CG3388 CG8118 CG11614 CG11614 CG11614 CG11614 CG6246 CG6824 CG2845 CG2845 CG3978 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG6348 CG8544 CG2621 CG2621 CG2621 CG2621 CG2621 CG2621 CG18102 CG16738 CG16738 CG11561 CG1374 CG2956 CG3830 CG3830 CG3830 CG2759 CG6193 CG7926 CG7926 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG6127 CG4698 CG4698 CG7508 CG2125 CG2125 CG4974 CG4974 CG4974 CG4974 CG4974 CG4974 CG4974 CG4974 CG32146 CG18361 CG18361 CG17697 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG16785 CG4353 CG4637 CG4637 CG4637 CG4637 CG2041 CG17964 CG17964 CG17964 CG17964 CG17964 CG17964 CG1857 CG1857 CG11518 CG11518 CG3827 CG10072 CG10072 CG10072 CG7623 CG2939 CG1903 CG10334 CG11049 CG11049 CG33101 CG7850 CG7850 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.70None
Head14 13 of 4 5.10Up
Eye36 34 of 412.56Up
Thoracicoabdominal ganglion3 00 of 4 1.00None
Salivary gland135 64 of 446.21Up
Crop9 01 of 4 3.20Up
Midgut9 00 of 4 3.30Up
Tubule5 00 of 4 1.90Up
Hindgut21 14 of 4 7.40Up
Heart3 21 of 4 1.26None
Fat body11 30 of 4 3.95Up
Ovary2 10 of 4 0.80None
Testis4 00 of 4 1.60None
Male accessory glands6 20 of 4 2.20None
Virgin spermatheca12 00 of 4 4.19Up
Mated spermatheca9 31 of 4 3.35None
Adult carcass2 10 of 4 0.80None
Larval CNS30 54 of 410.51Up
Larval Salivary gland31 34 of 410.63Up
Larval midgut6 20 of 4 2.29None
Larval tubule6 10 of 4 2.20None
Larval hindgut134 34 of 446.01Up
Larval fat body4 20 of 4 1.40None
Larval trachea29 54 of 410.10Up
Larval carcass32 24 of 411.13Up
S2 cells (growing)1 00 of 4 0.64None
Whole fly2 10 of 4

Looking for CG4889-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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