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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4891-RA through 18771 annotations produced 1 hits



(CG4891):

Annotation Number : CG4891
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028520
Gbrowse : chr2L:16095008-16095944 (+) // 100.0 //
Probeset : 1627831_at
Accessions : protein= NP_609777;, nucleotide= NM_135933;
FlyMine data for FBgn0028520.
BDGP gene expression has embryonic in situ data for BG:DS04095.1: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0028520 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.10Down
Head2 00 of 4 0.10Down
Eye2 10 of 4 0.09Down
Thoracicoabdominal ganglion4 10 of 4 0.20Down
Salivary gland13 61 of 4 0.52None
Crop4 11 of 4 0.20Down
Midgut5 21 of 4 0.20Down
Tubule5 01 of 4 0.20Down
Hindgut4 00 of 4 0.20Down
Heart4 11 of 4 0.17Down
Fat body3 00 of 4 0.14Down
Ovary2 00 of 4 0.10Down
Testis395 94 of 415.30Up
Male accessory glands3 10 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.07Down
Mated spermatheca3 10 of 4 0.13Down
Adult carcass2 10 of 4 0.10Down
Larval CNS2 11 of 4 0.10Down
Larval Salivary gland1 00 of 4 0.07Down
Larval midgut3 11 of 4 0.14Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut4 12 of 4 0.16Down
Larval fat body74 404 of 4 2.90None
Larval trachea4 11 of 4 0.19Down
Larval carcass3 01 of 4 0.15Down
S2 cells (growing)1 00 of 4 0.07Down
Whole fly25 14 of 4

Looking for CG4891-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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