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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4898-RE through 18771 annotations produced 2 hits



Tropomyosin (Tm1):

Annotation Number : CG4898
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003721
Gbrowse : chr3R:11107253-11133715 (+) // 100.0 //
Probeset : 1635584_s_at
Accessions : protein= NP_001163619; /// NP_524360; /// NP_732001; /// NP_732002; /// NP_732003; /// NP_732004; /// NP_732005; /// NP_732006; /// NP_732007; /// NP_732008; /// NP_732009; /// NP_996216; /// NP_996217;, nucleotide= NM_001170148; /// NM_079636; /// NM_169633; /// NM_169634; /// NM_169635; /// NM_169636; /// NM_169637; /// NM_169638; /// NM_169639; /// NM_169640; /// NM_169641; /// NM_206494; /// NM_206495;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // traceable au
FlyMine data for FBgn0003721.
Homophila reports that CG4898 is a close match (4e-11) to human gene CMD1Y;CMH3;TPM1 (NP_001018008), a gene associated with Cardiomyopathy, dilated, 1Y, 611878 (3);Cardiomyopathy, familial hypertrophic, 3, 115196 (3).
BioGrid reports that CG4898 interacts with CG4898 CG5338 CG5376 CG9401 CG10901 CG5771 CG3506 .
TRiP has 1 RNAi stocks for FBgn0003721 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003721 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 74 of 4 0.10Down
Head968 604 of 4 1.00None
Eye415 344 of 4 0.42Down
Thoracicoabdominal ganglion214 114 of 4 0.20Down
Salivary gland47 64 of 4 0.05Down
Crop5667 3754 of 4 5.70Up
Midgut781 274 of 4 0.80Down
Tubule134 104 of 4 0.10Down
Hindgut3656 804 of 4 3.70Up
Heart3304 1834 of 4 3.35Up
Fat body203 554 of 4 0.21Down
Ovary78 84 of 4 0.10Down
Testis155 74 of 4 0.20Down
Male accessory glands1573 994 of 4 1.60Up
Virgin spermatheca173 204 of 4 0.18Down
Mated spermatheca277 244 of 4 0.28Down
Adult carcass2477 1824 of 4 2.50Up
Larval CNS90 114 of 4 0.09Down
Larval Salivary gland59 34 of 4 0.06Down
Larval midgut996 324 of 4 1.01None
Larval tubule78 74 of 4 0.10Down
Larval hindgut4092 414 of 4 4.15Up
Larval fat body24 74 of 4 0.00Down
Larval trachea1059 5534 of 4 1.07None
Larval carcass5110 4834 of 4 5.18Up
S2 cells (growing)13 14 of 4 0.01Down
Whole fly986 364 of 4



Tropomyosin (Tm1):

Annotation Number : CG4898
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003721
Gbrowse : chr3R:11107273-11115209 (+) // 100.0 //
Probeset : 1625542_a_at
Accessions : protein= NP_001163619; /// NP_524360; /// NP_732001; /// NP_732002; /// NP_732003; /// NP_732004; /// NP_732005; /// NP_732006; /// NP_732007; /// NP_732008; /// NP_732009; /// NP_996216; /// NP_996217;, nucleotide= NM_001170148; /// NM_079636; /// NM_169633; /// NM_169634; /// NM_169635; /// NM_169636; /// NM_169637; /// NM_169638; /// NM_169639; /// NM_169640; /// NM_169641; /// NM_206494; /// NM_206495;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // traceable au
FlyMine data for FBgn0003721.
Homophila reports that CG4898 is a close match (4e-11) to human gene CMD1Y;CMH3;TPM1 (NP_001018008), a gene associated with Cardiomyopathy, dilated, 1Y, 611878 (3);Cardiomyopathy, familial hypertrophic, 3, 115196 (3).
BioGrid reports that CG4898 interacts with CG4898 CG5338 CG5376 CG9401 CG10901 CG5771 CG3506 .
TRiP has 1 RNAi stocks for FBgn0003721 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003721 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 14 of 4 0.50Down
Head20 44 of 4 0.50Down
Eye9 13 of 4 0.26Down
Thoracicoabdominal ganglion19 24 of 4 0.50Down
Salivary gland40 34 of 4 1.12None
Crop77 84 of 4 2.10Up
Midgut35 44 of 4 1.00None
Tubule10 01 of 4 0.30Down
Hindgut44 14 of 4 1.20Up
Heart12 04 of 4 0.35Down
Fat body14 52 of 4 0.40Down
Ovary55 44 of 4 1.50Up
Testis15 14 of 4 0.40Down
Male accessory glands20 22 of 4 0.60Down
Virgin spermatheca2 10 of 4 0.07Down
Mated spermatheca4 10 of 4 0.11Down
Adult carcass38 24 of 4 1.10None
Larval CNS13 14 of 4 0.38Down
Larval Salivary gland29 23 of 4 0.82Down
Larval midgut17 33 of 4 0.48Down
Larval tubule28 24 of 4 0.80Down
Larval hindgut41 24 of 4 1.14None
Larval fat body30 14 of 4 0.80Down
Larval trachea5 20 of 4 0.16Down
Larval carcass33 34 of 4 0.93None
S2 cells (growing)72 34 of 4 2.00Up
Whole fly36 14 of 4

Looking for CG4898-RE. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime