Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4900-RA through 18771 annotations produced 1 hits



cytosolic aconitase (Irp-1A):

Annotation Number : CG4900
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024958
Gbrowse : chr3R:18547041-18550294 (-) // 100.0 //
Probeset : 1627562_at
Accessions : protein= NP_477371;, nucleotide= NM_058023;
Interpro : "0003729 // mRNA binding // inferred from sequence or structural similarity /// 0003729 // mRNA binding // non-traceable
FlyMine data for FBgn0024958.
BDGP gene expression has embryonic in situ data for Irp-1A: 4 pix of staining in 1 body parts.
BioGrid reports that CG4900 interacts with CG9083 .
VDRC has 1 RNAi stocks for FBgn0024958 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain223 34 of 4 2.50Up
Head152 74 of 4 1.70Up
Eye279 154 of 4 3.12Up
Thoracicoabdominal ganglion227 94 of 4 2.50Up
Salivary gland125 104 of 4 1.40Up
Crop171 64 of 4 1.90Up
Midgut122 34 of 4 1.40Up
Tubule316 304 of 4 3.50Up
Hindgut126 14 of 4 1.40Up
Heart118 54 of 4 1.32Up
Fat body137 44 of 4 1.53Up
Ovary137 64 of 4 1.50Up
Testis84 44 of 4 0.90None
Male accessory glands182 74 of 4 2.00Up
Virgin spermatheca211 34 of 4 2.36Up
Mated spermatheca232 134 of 4 2.59Up
Adult carcass100 44 of 4 1.10None
Larval CNS217 14 of 4 2.43Up
Larval Salivary gland304 214 of 4 3.39Up
Larval midgut107 84 of 4 1.20None
Larval tubule820 254 of 4 9.10Up
Larval hindgut168 64 of 4 1.88Up
Larval fat body1125 1344 of 412.50Up
Larval trachea141 84 of 4 1.58Up
Larval carcass154 44 of 4 1.72Up
S2 cells (growing)192 44 of 4 2.14Up
Whole fly89 24 of 4

Looking for CG4900-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime