FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4908-RA through 18771 annotations produced 1 hits

(CG4908):

Annotation Number : CG4908
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032195
Gbrowse : chr2L:10222657-10224442 (+) // 100.0 //
Probeset : 1630174_s_at
Accessions : protein= NP_609358; /// NP_723532;, nucleotide= NM_135514; /// NM_164892;
Pathway : 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electr
FlyMine data for FBgn0032195.
BDGP gene expression has embryonic in situ data for CG4908: 11 pix of staining in 8 body parts.
Homophila reports that CG4908 is a close match (2e-15) to human gene CAR;CMAR;PGN;SPG7 (NP_003110), a gene associated with Spastic paraplegia-7, 607259 (3).
TRiP has 2 RNAi stocks for FBgn0032195 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032195 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	90 ± 3	4 of 4	1.40	Up
Head	54 ± 3	4 of 4	0.80	None
Eye	25 ± 2	4 of 4	0.39	Down
Thoracicoabdominal ganglion	117 ± 8	4 of 4	1.80	Up
Salivary gland	70 ± 8	3 of 4	1.08	None
Crop	61 ± 4	4 of 4	0.90	None
Midgut	49 ± 2	3 of 4	0.80	Down
Tubule	79 ± 3	4 of 4	1.20	Up
Hindgut	84 ± 2	4 of 4	1.30	Up
Heart	48 ± 2	4 of 4	0.75	Down
Fat body	57 ± 8	4 of 4	0.87	None
Ovary	119 ± 8	4 of 4	1.80	Up
Testis	16 ± 1	4 of 4	0.30	Down
Male accessory glands	40 ± 3	4 of 4	0.60	Down
Virgin spermatheca	56 ± 5	4 of 4	0.87	None
Mated spermatheca	57 ± 4	4 of 4	0.88	None
Adult carcass	69 ± 4	4 of 4	1.10	None
Larval CNS	79 ± 8	4 of 4	1.22	None
Larval Salivary gland	37 ± 1	4 of 4	0.58	Down
Larval midgut	40 ± 7	2 of 4	0.61	Down
Larval tubule	16 ± 1	0 of 4	0.30	Down
Larval hindgut	56 ± 7	4 of 4	0.87	None
Larval fat body	22 ± 4	0 of 4	0.30	Down
Larval trachea	67 ± 9	4 of 4	1.04	None
Larval carcass	45 ± 2	4 of 4	0.69	Down
S2 cells (growing)	44 ± 2	4 of 4	0.68	Down
Whole fly	65 ± 4	4 of 4

Looking for CG4908-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720