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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4908-RA through 18771 annotations produced 1 hits



(CG4908):

Annotation Number : CG4908
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032195
Gbrowse : chr2L:10222657-10224442 (+) // 100.0 //
Probeset : 1630174_s_at
Accessions : protein= NP_609358; /// NP_723532;, nucleotide= NM_135514; /// NM_164892;
Pathway : 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electr
FlyMine data for FBgn0032195.
BDGP gene expression has embryonic in situ data for CG4908: 11 pix of staining in 8 body parts.
Homophila reports that CG4908 is a close match (2e-15) to human gene CAR;CMAR;PGN;SPG7 (NP_003110), a gene associated with Spastic paraplegia-7, 607259 (3).
TRiP has 2 RNAi stocks for FBgn0032195 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032195 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain90 34 of 4 1.40Up
Head54 34 of 4 0.80None
Eye25 24 of 4 0.39Down
Thoracicoabdominal ganglion117 84 of 4 1.80Up
Salivary gland70 83 of 4 1.08None
Crop61 44 of 4 0.90None
Midgut49 23 of 4 0.80Down
Tubule79 34 of 4 1.20Up
Hindgut84 24 of 4 1.30Up
Heart48 24 of 4 0.75Down
Fat body57 84 of 4 0.87None
Ovary119 84 of 4 1.80Up
Testis16 14 of 4 0.30Down
Male accessory glands40 34 of 4 0.60Down
Virgin spermatheca56 54 of 4 0.87None
Mated spermatheca57 44 of 4 0.88None
Adult carcass69 44 of 4 1.10None
Larval CNS79 84 of 4 1.22None
Larval Salivary gland37 14 of 4 0.58Down
Larval midgut40 72 of 4 0.61Down
Larval tubule16 10 of 4 0.30Down
Larval hindgut56 74 of 4 0.87None
Larval fat body22 40 of 4 0.30Down
Larval trachea67 94 of 4 1.04None
Larval carcass45 24 of 4 0.69Down
S2 cells (growing)44 24 of 4 0.68Down
Whole fly65 44 of 4

Looking for CG4908-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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