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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4912-RA through 18771 annotations produced 1 hits



eEF1delta (eEF1delta):

Annotation Number : CG4912
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032198
Gbrowse : chr2L:10232510-10234455 (+) // 100.0 //
Probeset : 1632267_a_at
Accessions : protein= NP_609361; /// NP_723536;, nucleotide= NM_135517; /// NM_164895;
Pathway : 0005853 // eukaryotic translation elongation factor 1 complex // inferred from electronic annotation /// 0005853 // euka
Interpro : 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003746 // translation elon
FlyMine data for FBgn0032198.
BDGP gene expression has embryonic in situ data for eEF1delta: 19 pix of staining in 23 body parts.
BioGrid reports that CG4912 interacts with CG7283 .
TRiP has 1 RNAi stocks for FBgn0032198 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032198 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain398 44 of 4 0.30Down
Head1085 414 of 4 0.80Down
Eye862 514 of 4 0.67Down
Thoracicoabdominal ganglion478 124 of 4 0.40Down
Salivary gland1044 114 of 4 0.82Down
Crop791 294 of 4 0.60Down
Midgut699 114 of 4 0.50Down
Tubule1043 714 of 4 0.80Down
Hindgut632 194 of 4 0.50Down
Heart1357 604 of 4 1.06None
Fat body1994 2254 of 4 1.56Up
Ovary1595 264 of 4 1.20Up
Testis559 114 of 4 0.40Down
Male accessory glands1974 394 of 4 1.50Up
Virgin spermatheca2113 1164 of 4 1.65Up
Mated spermatheca2336 1294 of 4 1.83Up
Adult carcass1275 914 of 4 1.00None
Larval CNS1145 164 of 4 0.90None
Larval Salivary gland2572 1864 of 4 2.01Up
Larval midgut513 264 of 4 0.40Down
Larval tubule871 134 of 4 0.70Down
Larval hindgut823 644 of 4 0.64Down
Larval fat body1417 2024 of 4 1.10None
Larval trachea1649 2784 of 4 1.29None
Larval carcass1133 1194 of 4 0.89None
S2 cells (growing)1084 234 of 4 0.85Down
Whole fly1278 454 of 4

Looking for CG4912-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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