Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4917-RA through 18771 annotations produced 1 hits



wolfram syndrome 1 (wfs1):

Annotation Number : CG4917
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039003
Gbrowse : chr3R:18513288-18516055 (-) // 100.0 //
Probeset : 1626657_a_at
Accessions : protein= NP_651079; /// NP_732783;, nucleotide= NM_142822; /// NM_170035;
Pathway : 0017109 // glutamate-cysteine ligase complex // inferred from sequence or structural similarity
Interpro : 0004357 // glutamate-cysteine ligase activity // inferred from sequence or structural similarity /// 0004357 // glutamat
FlyMine data for FBgn0039003.
BDGP gene expression has embryonic in situ data for CG4917: 4 pix of staining in 1 body parts.
Homophila reports that CG4917 is a close match (2e-43) to human gene DFNA6;WFRS;WFS;WFS1 (NP_005996), a gene associated with Hearing loss, low-frequency sensorineural, 600965 (3);Wolfram syndrome, 222300 (3);Wolfram-like syndrome, autosomal dominant, 222300 (3);{Diabetes mellitus, noninsulin-dependent, association with}, 125853 (3).
VDRC has 3 RNAi stocks for FBgn0039003 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 ± 24 of 4 1.50None
Head34 ± 34 of 4 0.90None
Eye62 ± 64 of 4 1.69Up
Thoracicoabdominal ganglion42 ± 34 of 4 1.10None
Salivary gland46 ± 30 of 4 1.26None
Crop33 ± 24 of 4 0.90None
Midgut22 ± 20 of 4 0.60None
Tubule23 ± 20 of 4 0.60Down
Hindgut27 ± 30 of 4 0.70None
Heart28 ± 24 of 4 0.76None
Fat body18 ± 72 of 4 0.50Down
Ovary63 ± 14 of 4 1.70Up
Testis131 ± 104 of 4 3.60Up
Male accessory glands62 ± 44 of 4 1.70Up
Virgin spermatheca23 ± 23 of 4 0.63None
Mated spermatheca18 ± 33 of 4 0.50Down
Adult carcass27 ± 20 of 4 0.80None
Larval CNS45 ± 34 of 4 1.24None
Larval Salivary gland56 ± 63 of 4 1.53None
Larval midgut26 ± 10 of 4 0.71None
Larval tubule29 ± 14 of 4 0.80None
Larval hindgut35 ± 20 of 4 0.96None
Larval fat body46 ± 54 of 4 1.20None
Larval trachea46 ± 34 of 4 1.27None
Larval carcass31 ± 14 of 4 0.84None
S2 cells (growing)146 ± 34 of 4 3.95Up
Whole fly37 ± 54 of 4

Looking for CG4917-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime