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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4920-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3R:11154451-11156130 (+) // 99.65 //):

Annotation Number : CG4920
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr3-57
Gbrowse :
Probeset : 1639867_at
Accessions : protein= EC:3.4.-.- /// EC:3.4.21.-, nucleotide=
Interpro : "0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // non-traceable author statem
FlyMine data for chr3-57.
Homophila reports that CG4920 is a close match (2e-11) to human gene DFNB10;DFNB8;ECHOS1;TMPRSS3 (NP_115781), a gene associated with Deafness, autosomal recessive 10, congenital, 605316 (3);Deafness, autosomal recessive 8, childhood onset, 601072 (3).
BioGrid reports that CG4920 interacts with CG5848 CG5848 CG5848 CG5848 CG5848 CG5848 CG5490 CG14028 CG7904 CG7734 CG14029 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 14 of 4 0.20Down
Head110 44 of 4 1.20Up
Eye58 34 of 4 0.62Down
Thoracicoabdominal ganglion31 24 of 4 0.30Down
Salivary gland13 50 of 4 0.14Down
Crop340 64 of 4 3.60Up
Midgut17 10 of 4 0.20Down
Tubule11 21 of 4 0.10Down
Hindgut356 84 of 4 3.70Up
Heart5 10 of 4 0.05Down
Fat body5 30 of 4 0.06Down
Ovary202 34 of 4 2.10Up
Testis11 04 of 4 0.10Down
Male accessory glands4 10 of 4 0.00Down
Virgin spermatheca42 24 of 4 0.45Down
Mated spermatheca58 34 of 4 0.61Down
Adult carcass64 44 of 4 0.70Down
Larval CNS12 24 of 4 0.13Down
Larval Salivary gland15 00 of 4 0.16Down
Larval midgut18 00 of 4 0.19Down
Larval tubule5 20 of 4 0.10Down
Larval hindgut341 174 of 4 3.58Up
Larval fat body11 20 of 4 0.10Down
Larval trachea398 514 of 4 4.19Up
Larval carcass231 234 of 4 2.43Up
S2 cells (growing)2 00 of 4 0.03Down
Whole fly95 44 of 4

Looking for CG4920-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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