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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4922-RA through 18771 annotations produced 1 hits



spalt (sala):

Annotation Number : CG4922
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003313
Gbrowse : chr2L:11486188-11486955 (+) // 100.0 //
Probeset : 1638000_at
Accessions : protein= NP_523549;, nucleotide= NM_078825;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0003313.
BDGP gene expression has embryonic in situ data for sala: 35 pix of staining in 43 body parts.
BioGrid reports that CG4922 interacts with CG5295 CG5094 CG7044 CG7188 CG8736 CG9572 CG9734 .
TRiP has 2 RNAi stocks for FBgn0003313 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003313 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 20 of 4 0.10None
Head6 20 of 4 0.10None
Eye2 10 of 4 0.04None
Thoracicoabdominal ganglion7 00 of 4 0.10None
Salivary gland11 10 of 4 0.17None
Crop24 24 of 4 0.40None
Midgut4 10 of 4 0.10None
Tubule5 10 of 4 0.10Down
Hindgut5 10 of 4 0.10None
Heart2 10 of 4 0.04None
Fat body20 21 of 4 0.30None
Ovary2 00 of 4 0.00None
Testis15 14 of 4 0.20None
Male accessory glands11 21 of 4 0.20None
Virgin spermatheca12 13 of 4 0.18None
Mated spermatheca17 33 of 4 0.25None
Adult carcass4 20 of 4 0.10None
Larval CNS12 34 of 4 0.18None
Larval Salivary gland9 12 of 4 0.14None
Larval midgut6 10 of 4 0.09None
Larval tubule9 03 of 4 0.10None
Larval hindgut6 00 of 4 0.09None
Larval fat body76 24 of 4 1.10None
Larval trachea2 10 of 4 0.03None
Larval carcass15 14 of 4 0.22None
S2 cells (growing)4 10 of 4 0.07None
Whole fly69 214 of 4

Looking for CG4922-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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