FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4925-RA through 18771 annotations produced 1 hits

(CG4925):

Annotation Number : CG4925
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036614
Gbrowse : chr3L:16341844-16344998 (-) // 100.0 //
Probeset : 1625422_at
Accessions : protein= NP_648879;, nucleotide= NM_140622;
Interpro : 0004871 // signal transducer activity // non-traceable author statement /// 0005515 // protein binding // inferred from
FlyMine data for FBgn0036614.
BioGrid reports that CG4925 interacts with CG7785 CG6156 .
VDRC has 2 RNAi stocks for FBgn0036614 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	82 ± 3	4 of 4	1.40	Up
Head	36 ± 1	4 of 4	0.60	Down
Eye	62 ± 4	4 of 4	1.06	None
Thoracicoabdominal ganglion	83 ± 2	4 of 4	1.40	Up
Salivary gland	109 ± 5	4 of 4	1.87	Up
Crop	51 ± 2	4 of 4	0.90	None
Midgut	57 ± 1	4 of 4	1.00	None
Tubule	56 ± 2	4 of 4	1.00	None
Hindgut	49 ± 2	4 of 4	0.80	None
Heart	23 ± 1	4 of 4	0.41	Down
Fat body	26 ± 5	4 of 4	0.46	Down
Ovary	125 ± 2	4 of 4	2.10	Up
Testis	93 ± 1	4 of 4	1.60	Up
Male accessory glands	48 ± 2	4 of 4	0.80	None
Virgin spermatheca	29 ± 3	4 of 4	0.50	Down
Mated spermatheca	27 ± 3	4 of 4	0.47	Down
Adult carcass	33 ± 3	4 of 4	0.60	Down
Larval CNS	70 ± 4	4 of 4	1.21	Up
Larval Salivary gland	76 ± 1	4 of 4	1.29	Up
Larval midgut	70 ± 3	4 of 4	1.19	None
Larval tubule	90 ± 5	4 of 4	1.50	Up
Larval hindgut	51 ± 1	4 of 4	0.88	None
Larval fat body	31 ± 4	4 of 4	0.50	Down
Larval trachea	35 ± 4	4 of 4	0.61	Down
Larval carcass	32 ± 1	4 of 4	0.55	Down
S2 cells (growing)	50 ± 1	4 of 4	0.87	None
Whole fly	58 ± 3	4 of 4

Looking for CG4925-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720