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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG4927-RA through 18771 annotations produced 1 hits


Annotation Number : CG4927
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034139
Gbrowse : chr2R:12459816-12461325 (+) // 100.0 //
Probeset : 1637794_at
Accessions : protein= NP_001033953;, nucleotide= NM_001038864;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0034139.
Homophila reports that CG4927 is a close match (2e-11) to human gene F7 (NP_062562), a gene associated with Factor VII deficiency (3);{Myocardial infarction, decreased susceptibility to} (3).
VDRC has 1 RNAi stocks for FBgn0034139 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 20 of 4 0.50None
Head44 14 of 4 3.40Up
Eye8 30 of 4 0.67None
Thoracicoabdominal ganglion4 10 of 4 0.30Down
Salivary gland4 20 of 4 0.33None
Crop1 00 of 4 0.10Down
Midgut4 10 of 4 0.30Down
Tubule3 00 of 4 0.30Down
Hindgut6 10 of 4 0.50None
Heart214 104 of 416.37Up
Fat body27 70 of 4 2.09Up
Ovary3 10 of 4 0.30Down
Testis7 10 of 4 0.50None
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca8 10 of 4 0.66None
Mated spermatheca12 20 of 4 0.95None
Adult carcass50 61 of 4 3.80Up
Larval CNS1 00 of 4 0.08Down
Larval Salivary gland1 00 of 4 0.14Down
Larval midgut2 00 of 4 0.15Down
Larval tubule17 22 of 4 1.30None
Larval hindgut3 00 of 4 0.28Down
Larval fat body16 50 of 4 1.30None
Larval trachea11 32 of 4 0.86None
Larval carcass26 11 of 4 2.02Up
S2 cells (growing)9 10 of 4 0.70None
Whole fly13 20 of 4

Looking for CG4927-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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