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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4930-RA through 18771 annotations produced 1 hits



CG4930 (EndoGI):

Annotation Number : CG4930
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028515
Gbrowse : chr2L:16257992-16259433 (+) // 100.0 //
Probeset : 1632026_at
Accessions : protein= NP_609781;, nucleotide= NM_135937;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
Interpro : "0003677 // DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inf
FlyMine data for FBgn0028515.
VDRC has 2 RNAi stocks for FBgn0028515 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain100 44 of 4 0.60Down
Head167 24 of 4 1.00None
Eye178 24 of 4 1.08Up
Thoracicoabdominal ganglion130 44 of 4 0.80Down
Salivary gland352 54 of 4 2.14Up
Crop471 254 of 4 2.90Up
Midgut254 74 of 4 1.50Up
Tubule610 1444 of 4 3.70Up
Hindgut373 74 of 4 2.30Up
Heart245 174 of 4 1.49Up
Fat body178 124 of 4 1.08None
Ovary194 34 of 4 1.20Up
Testis115 34 of 4 0.70Down
Male accessory glands259 114 of 4 1.60Up
Virgin spermatheca316 114 of 4 1.92Up
Mated spermatheca389 154 of 4 2.36Up
Adult carcass159 84 of 4 1.00None
Larval CNS215 184 of 4 1.31Up
Larval Salivary gland1131 464 of 4 6.87Up
Larval midgut252 104 of 4 1.53Up
Larval tubule445 44 of 4 2.70Up
Larval hindgut593 184 of 4 3.60Up
Larval fat body376 294 of 4 2.30Up
Larval trachea1022 964 of 4 6.21Up
Larval carcass535 194 of 4 3.25Up
S2 cells (growing)607 124 of 4 3.68Up
Whole fly164 34 of 4

Looking for CG4930-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime