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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4931-RA through 18771 annotations produced 1 hits



specifically Rac1-associated protein 1 (Sra-1):

Annotation Number : CG4931
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038320
Gbrowse : chr3R:11159000-11164096 (+) // 99.85 //
Probeset : 1626993_at
Accessions : protein= NP_650447;, nucleotide= NM_142190;
Pathway : engulfment // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from elect
Interpro : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electr
FlyMine data for FBgn0038320.
TRiP has 1 RNAi stocks for FBgn0038320 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038320 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain509 184 of 4 1.20Up
Head434 164 of 4 1.00None
Eye377 114 of 4 0.90None
Thoracicoabdominal ganglion607 264 of 4 1.50Up
Salivary gland807 394 of 4 1.93Up
Crop470 114 of 4 1.10Up
Midgut604 64 of 4 1.40Up
Tubule524 104 of 4 1.30Up
Hindgut487 124 of 4 1.20Up
Heart505 284 of 4 1.21Up
Fat body286 304 of 4 0.69Down
Ovary611 194 of 4 1.50Up
Testis108 64 of 4 0.30Down
Male accessory glands889 314 of 4 2.10Up
Virgin spermatheca451 114 of 4 1.08None
Mated spermatheca545 174 of 4 1.31Up
Adult carcass267 124 of 4 0.60Down
Larval CNS933 824 of 4 2.23Up
Larval Salivary gland629 194 of 4 1.51Up
Larval midgut565 74 of 4 1.35Up
Larval tubule491 374 of 4 1.20None
Larval hindgut500 134 of 4 1.20Up
Larval fat body286 254 of 4 0.70Down
Larval trachea744 734 of 4 1.78Up
Larval carcass379 184 of 4 0.91None
S2 cells (growing)1070 164 of 4 2.56Up
Whole fly417 144 of 4

Looking for CG4931-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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