FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4934-RA through 18771 annotations produced 1 hits

Gene B (brn):

Annotation Number : CG4934
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000221
Gbrowse : chrX:3998376-3999830 (+) // 100.0 //
Probeset : 1625107_at
Accessions : protein= NP_476901;, nucleotide= NM_057553;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from se
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0008375 // acetylglucosaminyltransferase activity
FlyMine data for FBgn0000221.
Homophila reports that CG4934 is a close match (9e-23) to human gene B3GALT3;GLCT3;P (NP_149359), a gene associated with [Blood group, P system], 111400 (3);{Urinary tract infection, susceptibility to} (1).
BioGrid reports that CG4934 interacts with CG5102 .
VDRC has 2 RNAi stocks for FBgn0000221 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	37 ± 1	4 of 4	0.90	None
Head	25 ± 1	4 of 4	0.70	Down
Eye	38 ± 3	4 of 4	0.98	None
Thoracicoabdominal ganglion	61 ± 2	4 of 4	1.60	Up
Salivary gland	49 ± 5	4 of 4	1.25	None
Crop	25 ± 2	4 of 4	0.60	Down
Midgut	40 ± 2	4 of 4	1.00	None
Tubule	26 ± 1	4 of 4	0.70	Down
Hindgut	25 ± 1	4 of 4	0.70	Down
Heart	24 ± 2	4 of 4	0.63	Down
Fat body	20 ± 5	4 of 4	0.53	Down
Ovary	49 ± 1	4 of 4	1.30	None
Testis	37 ± 2	4 of 4	0.90	None
Male accessory glands	59 ± 2	4 of 4	1.50	Up
Virgin spermatheca	25 ± 2	4 of 4	0.63	Down
Mated spermatheca	31 ± 0	4 of 4	0.80	None
Adult carcass	33 ± 6	4 of 4	0.90	None
Larval CNS	31 ± 3	4 of 4	0.81	None
Larval Salivary gland	37 ± 0	4 of 4	0.95	None
Larval midgut	37 ± 6	4 of 4	0.94	None
Larval tubule	31 ± 2	4 of 4	0.80	None
Larval hindgut	28 ± 1	4 of 4	0.73	None
Larval fat body	28 ± 2	4 of 4	0.70	None
Larval trachea	60 ± 4	4 of 4	1.54	Up
Larval carcass	30 ± 3	4 of 4	0.77	None
S2 cells (growing)	68 ± 3	4 of 4	1.75	Up
Whole fly	39 ± 3	4 of 4

Looking for CG4934-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720