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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4937-RA through 18771 annotations produced 1 hits



RhoGAP15B (RhoGAP15B):

Annotation Number : CG4937
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030808
Gbrowse : chrX:16843288-16850031 (+) // 100.0 //
Probeset : 1638940_at
Accessions : protein= NP_001036282; /// NP_573183;, nucleotide= NM_001042817; /// NM_132955;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005083 // small GTPase regulator activity // inferred from sequence or structural similarity /// 0005096 // GTPase acti
FlyMine data for FBgn0030808.
Homophila reports that CG4937 is a close match (6e-13) to human gene CELIAC4;MYO9B;MYR5 (NP_004136), a gene associated with {Celiac disease, susceptibility to, 4}, 609753 (3).
TRiP has 2 RNAi stocks for FBgn0030808 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030808 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 ± 14 of 4 0.30Down
Head51 ± 44 of 4 0.70Down
Eye38 ± 14 of 4 0.50Down
Thoracicoabdominal ganglion32 ± 24 of 4 0.40Down
Salivary gland42 ± 83 of 4 0.55Down
Crop82 ± 84 of 4 1.10None
Midgut161 ± 114 of 4 2.10Up
Tubule108 ± 44 of 4 1.40Up
Hindgut75 ± 34 of 4 1.00None
Heart54 ± 104 of 4 0.71None
Fat body87 ± 104 of 4 1.14None
Ovary189 ± 64 of 4 2.50Up
Testis13 ± 14 of 4 0.20Down
Male accessory glands69 ± 24 of 4 0.90None
Virgin spermatheca108 ± 44 of 4 1.41Up
Mated spermatheca105 ± 54 of 4 1.37Up
Adult carcass66 ± 44 of 4 0.90None
Larval CNS50 ± 44 of 4 0.66Down
Larval Salivary gland56 ± 44 of 4 0.73Down
Larval midgut108 ± 14 of 4 1.41Up
Larval tubule81 ± 34 of 4 1.10None
Larval hindgut71 ± 34 of 4 0.93None
Larval fat body112 ± 54 of 4 1.50Up
Larval trachea84 ± 174 of 4 1.10None
Larval carcass80 ± 14 of 4 1.05None
S2 cells (growing)205 ± 44 of 4 2.67Up
Whole fly76 ± 34 of 4

Looking for CG4937-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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