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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4938-RA through 18771 annotations produced 1 hits



Seryl-tRNA synthetase (Aats-ser):

Annotation Number : CG4938
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021750
Gbrowse : chr3R:11166406-11167939 (+) // 100.0 //
Probeset : 1636797_at
Accessions : protein= NP_524365;, nucleotide= NM_079641;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0021750.
BDGP gene expression has embryonic in situ data for Aats-ser: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0021750 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 24 of 4 0.80Down
Head52 34 of 4 0.70Down
Eye55 34 of 4 0.69Down
Thoracicoabdominal ganglion75 24 of 4 0.90None
Salivary gland56 114 of 4 0.70None
Crop61 24 of 4 0.80Down
Midgut66 14 of 4 0.80Down
Tubule82 24 of 4 1.00None
Hindgut58 34 of 4 0.70Down
Heart59 54 of 4 0.75Down
Fat body81 64 of 4 1.02None
Ovary151 54 of 4 1.90Up
Testis32 14 of 4 0.40Down
Male accessory glands43 64 of 4 0.60Down
Virgin spermatheca80 64 of 4 1.01None
Mated spermatheca71 84 of 4 0.89None
Adult carcass60 64 of 4 0.80Down
Larval CNS91 54 of 4 1.15Up
Larval Salivary gland53 64 of 4 0.68Down
Larval midgut51 34 of 4 0.64Down
Larval tubule84 34 of 4 1.10None
Larval hindgut84 24 of 4 1.06None
Larval fat body58 54 of 4 0.70Down
Larval trachea90 54 of 4 1.14Up
Larval carcass59 54 of 4 0.74Down
S2 cells (growing)104 64 of 4 1.31Up
Whole fly79 04 of 4

Looking for CG4938-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime