Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4943-RA through 18771 annotations produced 1 hits



Smurf (lack):

Annotation Number : CG4943
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029006
Gbrowse : chr2R:13480318-13491489 (+) // 100.0 //
Probeset : 1632355_at
Accessions : protein= NP_523779;, nucleotide= NM_079055;
Pathway : 0000151 // ubiquitin ligase complex // inferred from sequence or structural similarity /// 0005622 // intracellular // i
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0029006.
Homophila reports that CG4943 is a close match (1e-11) to human gene FOR;WWOX (NP_570607), a gene associated with Esophageal squamous cell carcinoma, 133239 (3).
BioGrid reports that CG4943 interacts with CG9885 CG9224 CG1775 .
TRiP has 1 RNAi stocks for FBgn0029006 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029006 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain213 ± 44 of 4 1.10Up
Head156 ± 54 of 4 0.80Down
Eye112 ± 34 of 4 0.60Down
Thoracicoabdominal ganglion167 ± 64 of 4 0.90Down
Salivary gland131 ± 64 of 4 0.69Down
Crop196 ± 54 of 4 1.00None
Midgut203 ± 44 of 4 1.10None
Tubule98 ± 44 of 4 0.50Down
Hindgut132 ± 44 of 4 0.70Down
Heart127 ± 64 of 4 0.68Down
Fat body169 ± 104 of 4 0.90Down
Ovary423 ± 64 of 4 2.20Up
Testis60 ± 14 of 4 0.30Down
Male accessory glands122 ± 44 of 4 0.60Down
Virgin spermatheca177 ± 164 of 4 0.94None
Mated spermatheca166 ± 94 of 4 0.88None
Adult carcass135 ± 74 of 4 0.70Down
Larval CNS280 ± 114 of 4 1.48Up
Larval Salivary gland159 ± 54 of 4 0.84Down
Larval midgut302 ± 214 of 4 1.60Up
Larval tubule128 ± 24 of 4 0.70Down
Larval hindgut185 ± 104 of 4 0.98None
Larval fat body203 ± 54 of 4 1.10None
Larval trachea169 ± 174 of 4 0.90None
Larval carcass176 ± 54 of 4 0.93None
S2 cells (growing)217 ± 74 of 4 1.15Up
Whole fly189 ± 34 of 4

Looking for CG4943-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime