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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4950-RA through 18771 annotations produced 1 hits



(CG4950):

Annotation Number : CG4950
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036587
Gbrowse : chr3L:16259516-16261310 (-) // 100.0 //
Probeset : 1640681_at
Accessions : protein= NP_648855;, nucleotide= NM_140598;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0036587.
Homophila reports that CG4950 is a close match (6e-11) to human gene GREAT;LGR8 (NP_570718), a gene associated with Cryptorchidism, bilateral, 219050 (3).
TRiP has 1 RNAi stocks for FBgn0036587 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036587 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain70 ± 34 of 4 2.10Up
Head234 ± 184 of 4 7.10Up
Eye29 ± 44 of 4 0.87None
Thoracicoabdominal ganglion27 ± 34 of 4 0.80None
Salivary gland17 ± 41 of 4 0.53None
Crop12 ± 21 of 4 0.40Down
Midgut2 ± 10 of 4 0.10Down
Tubule7 ± 10 of 4 0.20Down
Hindgut6 ± 10 of 4 0.20Down
Heart600 ± 174 of 418.07Up
Fat body24 ± 104 of 4 0.73None
Ovary2 ± 10 of 4 0.10Down
Testis16 ± 14 of 4 0.50None
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca13 ± 13 of 4 0.39Down
Mated spermatheca12 ± 14 of 4 0.36Down
Adult carcass239 ± 114 of 4 7.20Up
Larval CNS1 ± 00 of 4 0.03Down
Larval Salivary gland3 ± 10 of 4 0.11Down
Larval midgut3 ± 10 of 4 0.10Down
Larval tubule15 ± 22 of 4 0.50Down
Larval hindgut10 ± 12 of 4 0.30Down
Larval fat body39 ± 83 of 4 1.20None
Larval trachea17 ± 93 of 4 0.51None
Larval carcass82 ± 154 of 4 2.47Up
S2 cells (growing)2 ± 00 of 4 0.06Down
Whole fly33 ± 54 of 4

Looking for CG4950-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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