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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4953-RA through 18771 annotations produced 1 hits



(CG4953):

Annotation Number : CG4953
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032204
Gbrowse : chr2L:10266701-10268747 (+) // 100.0 //
Probeset : 1632184_at
Accessions : protein= NP_609365;, nucleotide= NM_135521;
FlyMine data for FBgn0032204.
BDGP gene expression has embryonic in situ data for CG4953: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0032204 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain101 34 of 4 1.00None
Head72 44 of 4 0.70Down
Eye87 34 of 4 0.87None
Thoracicoabdominal ganglion98 34 of 4 1.00None
Salivary gland134 84 of 4 1.33Up
Crop150 74 of 4 1.50Up
Midgut73 14 of 4 0.70Down
Tubule105 34 of 4 1.00None
Hindgut91 24 of 4 0.90None
Heart96 64 of 4 0.96None
Fat body93 154 of 4 0.92None
Ovary233 24 of 4 2.30Up
Testis27 14 of 4 0.30Down
Male accessory glands77 74 of 4 0.80None
Virgin spermatheca108 84 of 4 1.07None
Mated spermatheca166 74 of 4 1.64Up
Adult carcass48 54 of 4 0.50Down
Larval CNS125 114 of 4 1.24Up
Larval Salivary gland181 64 of 4 1.79Up
Larval midgut63 34 of 4 0.63Down
Larval tubule153 54 of 4 1.50Up
Larval hindgut91 54 of 4 0.90None
Larval fat body67 64 of 4 0.70Down
Larval trachea96 94 of 4 0.95None
Larval carcass67 44 of 4 0.66Down
S2 cells (growing)42 14 of 4 0.42Down
Whole fly101 64 of 4

Looking for CG4953-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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