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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4957-RA through 18771 annotations produced 1 hits



(CG4957):

Annotation Number : CG4957
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032205
Gbrowse : chr2L:10268894-10269900 (+) // 100.0 //
Probeset : 1634565_at
Accessions : protein= NP_609366;, nucleotide= NM_135522;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032205.
VDRC has 3 RNAi stocks for FBgn0032205 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain127 ± 34 of 4 1.10None
Head103 ± 64 of 4 0.90None
Eye141 ± 84 of 4 1.22None
Thoracicoabdominal ganglion154 ± 124 of 4 1.30None
Salivary gland66 ± 44 of 4 0.57Down
Crop107 ± 74 of 4 0.90None
Midgut80 ± 14 of 4 0.70Down
Tubule67 ± 34 of 4 0.60Down
Hindgut118 ± 34 of 4 1.00None
Heart120 ± 54 of 4 1.04None
Fat body130 ± 84 of 4 1.12None
Ovary195 ± 44 of 4 1.70Up
Testis108 ± 54 of 4 0.90None
Male accessory glands120 ± 14 of 4 1.00None
Virgin spermatheca95 ± 44 of 4 0.82None
Mated spermatheca105 ± 74 of 4 0.91None
Adult carcass97 ± 94 of 4 0.80None
Larval CNS98 ± 54 of 4 0.85None
Larval Salivary gland59 ± 44 of 4 0.51Down
Larval midgut55 ± 54 of 4 0.48Down
Larval tubule55 ± 34 of 4 0.50Down
Larval hindgut117 ± 134 of 4 1.01None
Larval fat body68 ± 54 of 4 0.60Down
Larval trachea106 ± 94 of 4 0.92None
Larval carcass138 ± 214 of 4 1.19None
S2 cells (growing)76 ± 54 of 4 0.65Down
Whole fly116 ± 74 of 4

Looking for CG4957-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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