FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4960-RA through 18771 annotations produced 1 hits

(CG4960):

Annotation Number : CG4960
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039371
Gbrowse : chr3R:21612236-21612944 (-) // 100.0 //
Probeset : 1626010_at
Accessions : protein= NP_651429;, nucleotide= NM_143172;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039371.
Homophila reports that CG4960 is a close match (2e-13) to human gene C2ORF23;REEP1;SPG31 (NP_075063), a gene associated with Spastic paraplegia 31, 610250 (3).
BioGrid reports that CG4960 interacts with CG9893 CG6251 .
VDRC has 4 RNAi stocks for FBgn0039371 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	1 of 4	0.20	Down
Head	7 ± 2	0 of 4	0.20	Down
Eye	4 ± 1	0 of 4	0.11	Down
Thoracicoabdominal ganglion	5 ± 1	0 of 4	0.10	Down
Salivary gland	13 ± 5	0 of 4	0.32	Down
Crop	3 ± 1	0 of 4	0.10	Down
Midgut	5 ± 0	0 of 4	0.10	Down
Tubule	10 ± 0	2 of 4	0.20	Down
Hindgut	6 ± 1	1 of 4	0.20	Down
Heart	3 ± 1	0 of 4	0.08	Down
Fat body	9 ± 3	0 of 4	0.23	Down
Ovary	3 ± 0	1 of 4	0.10	Down
Testis	436 ± 7	4 of 4	10.50	Up
Male accessory glands	13 ± 2	4 of 4	0.30	Down
Virgin spermatheca	8 ± 1	0 of 4	0.21	Down
Mated spermatheca	7 ± 1	1 of 4	0.17	Down
Adult carcass	13 ± 1	0 of 4	0.30	Down
Larval CNS	3 ± 1	0 of 4	0.08	Down
Larval Salivary gland	6 ± 1	1 of 4	0.15	Down
Larval midgut	4 ± 2	0 of 4	0.10	Down
Larval tubule	8 ± 2	1 of 4	0.20	Down
Larval hindgut	3 ± 1	0 of 4	0.08	Down
Larval fat body	44 ± 19	3 of 4	1.10	None
Larval trachea	5 ± 2	2 of 4	0.14	Down
Larval carcass	3 ± 1	0 of 4	0.08	Down
S2 cells (growing)	5 ± 1	1 of 4	0.12	Down
Whole fly	41 ± 4	4 of 4

Looking for CG4960-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720