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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4963-RA through 18771 annotations produced 1 hits



anon-fast-evolving-2H5 (mfrn):

Annotation Number : CG4963
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039561
Gbrowse : chr3R:23768510-23773731 (-) // 100.0 //
Probeset : 1632963_at
Accessions : protein= NP_651600;, nucleotide= NM_143343;
Pathway : 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotati
Interpro : 0005381 // iron ion transmembrane transporter activity // inferred from sequence or structural similarity /// 0005381 //
FlyMine data for FBgn0039561.
BDGP gene expression has embryonic in situ data for CG4963: 8 pix of staining in 1 body parts.
Homophila reports that CG4963 is a close match (8e-11) to human gene BMIQ4;UCP2 (NP_003346), a gene associated with {Obesity, susceptibility to, BMIQ4} (3).
BioGrid reports that CG4963 interacts with CG5363 CG6341 CG9277 .
TRiP has 1 RNAi stocks for FBgn0039561 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039561 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain541 154 of 4 2.70Up
Head369 154 of 4 1.80Up
Eye542 164 of 4 2.71Up
Thoracicoabdominal ganglion559 114 of 4 2.80Up
Salivary gland364 124 of 4 1.82Up
Crop208 34 of 4 1.00None
Midgut253 44 of 4 1.30Up
Tubule699 834 of 4 3.50Up
Hindgut184 64 of 4 0.90None
Heart278 104 of 4 1.39Up
Fat body195 224 of 4 0.98None
Ovary186 34 of 4 0.90None
Testis27 14 of 4 0.10Down
Male accessory glands85 54 of 4 0.40Down
Virgin spermatheca86 84 of 4 0.43Down
Mated spermatheca113 54 of 4 0.57Down
Adult carcass372 94 of 4 1.90Up
Larval CNS257 174 of 4 1.29Up
Larval Salivary gland231 74 of 4 1.16None
Larval midgut268 354 of 4 1.34None
Larval tubule385 374 of 4 1.90Up
Larval hindgut274 124 of 4 1.37Up
Larval fat body180 134 of 4 0.90None
Larval trachea251 174 of 4 1.26Up
Larval carcass219 144 of 4 1.09None
S2 cells (growing)432 74 of 4 2.16Up
Whole fly200 114 of 4

Looking for CG4963-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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